bool Directory::cp(const File& file) {

        // exe ise direk deep-independet copy al 
        const Executable *temp = dynamic_cast<const Executable *> (&file);
        if (temp != NULL) {
            Executable *nExe = new Executable(*temp);
            nExe->setTime("18/12/15"); // zamanlar temsilidir
            nExe->updatePath(this->path() + "/" + nExe->getName()); //path guncelle
            m_inFiles.insert(nExe); // containere sirali olarak ekle
        }

        // klasor ise copy constuctor ile o klasorun deep copy sini al
        const Directory *temp1 = dynamic_cast<const Directory *> (&file);
        if (temp1 != NULL) {
            Directory *nDir = new Directory(*temp1);
            nDir->setTime("19/12/15"); // zamanlar temsilidir
            nDir->updatePath(this->path() + "/" + nDir->getName()); // path upd.
            m_inFiles.insert(nDir);
        }

        // text dosyasi ise direk copy al
        const TextFile *temp2 = dynamic_cast<const TextFile *> (&file);
        if (temp2 != NULL) {
            TextFile *nText = new TextFile(*temp2);
            nText->setTime("21/12/15"); // zamanlar temsilidir
            nText->updatePath(this->path() + "/" + nText->getName());
            m_inFiles.insert(nText);
        }
        // dangling pointers
        temp = NULL;
        temp1 = NULL;
        temp2 = NULL;

        return true;
    }

void MSA::ToFASTAFile(TextFile &File) const
	{
	const unsigned uColCount = GetColCount();
	assert(uColCount > 0);
	const unsigned uLinesPerSeq = (GetColCount() - 1)/FASTA_BLOCK + 1;
	const unsigned uSeqCount = GetSeqCount();

	for (unsigned uSeqIndex = 0; uSeqIndex < uSeqCount; ++uSeqIndex)
		{
		File.PutString(">");
		File.PutString(GetSeqName(uSeqIndex));
		File.PutString("\n");

		unsigned n = 0;
		for (unsigned uLine = 0; uLine < uLinesPerSeq; ++uLine)
			{
			unsigned uLetters = uColCount - uLine*FASTA_BLOCK;
			if (uLetters > FASTA_BLOCK)
				uLetters = FASTA_BLOCK;
			for (unsigned i = 0; i < uLetters; ++i)
				{
				char c = GetChar(uSeqIndex, n);
				File.PutChar(c);
				++n;
				}
			File.PutChar('\n');
			}
		}
	}

void Parser::addEquation(const Token& startToken, const std::wstring& name, const std::wstring& value)
{
	// parse value string
	TextFile f;
	f.openMemory(value);

	FileTokenizer tok;
	tok.init(&f);

	TokenizerPosition start = tok.getPosition();
	while (tok.atEnd() == false)
	{
		const Token& token = tok.nextToken();
		if (token.type == TokenType::Identifier && token.getStringValue() == name)
		{
			printError(startToken,L"Recursive enum definition for \"%s\" not allowed",name);
			return;
		}
	}

	// extract tokens
	TokenizerPosition end = tok.getPosition();
	std::vector<Token> tokens = tok.getTokens(start, end);
	size_t index = Tokenizer::addEquValue(tokens);

	for (FileEntry& entry : entries)
		entry.tokenizer->resetLookaheadCheckMarks();

	// register equation
	Global.symbolTable.addEquation(name, Global.FileInfo.FileNum, Global.Section, index);
}

bool EncodingTable::load(const std::wstring& fileName, TextFile::Encoding encoding)
{
	unsigned char hexBuffer[MAXHEXLENGTH];

	TextFile input;
	if (input.open(fileName,TextFile::Read,encoding) == false)
		return false;

	hexData.clear();
	valueData.clear();
	entries.clear();
	setTerminationEntry((unsigned char*)"\0",1);

	while (!input.atEnd())
	{
		std::wstring line = input.readLine();
		if (line.empty() || line[0] == '*') continue;
		
		if (line[0] == '/')
		{
			std::wstring hex = line.substr(1);
			if (hex.empty() || hex.length() > 2*MAXHEXLENGTH)
			{
				// error
				continue;
			}

			int length = parseHexString(hex,hexBuffer);
			if (length == -1)
			{
				// error
				continue;
			}

			setTerminationEntry(hexBuffer,length);
		} else {
			size_t pos = line.find(L'=');
			std::wstring hex = line.substr(0,pos);
			std::wstring value = line.substr(pos+1);

			if (hex.empty() || value.empty() || hex.length() > 2*MAXHEXLENGTH)
			{
				// error
				continue;
			}
			
			int length = parseHexString(hex,hexBuffer);
			if (length == -1)
			{
				// error
				continue;
			}

			addEntry(hexBuffer,length,value);
		}
	}

	return true;
}

void QuantitativeExperimentalDesign::mapFiles2Design_(map<String, StringList> & experiments, TextFile & file)
{
    // get the defined separator from the parameter setting
    String separator;
    getSeparator_(separator);

    // read the header and split according separator
    StringList header;
    TextFile::Iterator iter = file.begin();
    iter->split(separator, header);
    ++iter;

    // define the column of file name and experimental setting
    UInt expCol = -1;
    UInt fileCol = -1;
    analyzeHeader_(expCol, fileCol, header);

    // read rest of the file, each row is already split according to separator
    vector<StringList> rows;
    for (; iter != file.end(); ++iter)
    {
        StringList column;
        iter->split(separator, column);
        rows.push_back(column);
    }

    // map all file names to the respective experimental setting
    map<String, StringList>::iterator it;

    for (vector<StringList>::iterator iter = rows.begin(); iter != rows.end(); ++iter)
    {
        // get experimental setting and file name
        String experiment = iter->at(expCol);
        String fileName = iter->at(fileCol);

        // search for experimental setting
        it = experiments.find(experiment);

        // if experimental setting is already present, add file name
        if (it != experiments.end())
        {
            StringList & list = it->second;
            list.push_back(fileName);
        }
        // otherwise create new list
        else
        {
            StringList newList;
            newList.push_back(fileName);
            experiments.insert(make_pair(experiment, newList));
        }
    }

    LOG_INFO << "\n Statistics: \n";
    for (it = experiments.begin(); it != experiments.end(); ++it)
    {
        LOG_INFO << "Experiment: " << it->first << ", number datasets: " << it->second.size() << endl;
    }
}

void
EnsureTemplates(void)
{
	// Because creating a new project depends on the existence of the Templates folder,
	// make sure that we have some (very) basic templates to work with if the folder
	// has been deleted.
	DPath templatePath = gAppPath.GetFolder();
	templatePath << "Templates";
	
	bool missing = false;
	BDirectory tempDir;
	if (!BEntry(templatePath.GetFullPath()).Exists())
	{
		BDirectory appDir(gAppPath.GetFolder());
		appDir.CreateDirectory("Templates", &tempDir);
		missing = true;
	}
	else
	{
		tempDir.SetTo(templatePath.GetFullPath());
		if (tempDir.CountEntries() == 0)
			missing = true;
	}
	
	if (missing)
	{
		BDirectory dir;
		tempDir.CreateDirectory("Empty Application", &dir);
		tempDir.CreateDirectory("Kernel Driver", &dir);
		tempDir.CreateDirectory("Shared Library or Addon", &dir);
		tempDir.CreateDirectory("Static Library", &dir);
		
		DPath filePath;
		TextFile file;
		
		filePath = templatePath;
		filePath << "Empty Application/TEMPLATEINFO";
		file.SetTo(filePath.GetFullPath(), B_CREATE_FILE | B_READ_WRITE);
		file.WriteString("TYPE=Application\nLIB=B_BEOS_LIB_DIRECTORY/libsupc++.so\n");
		
		filePath = templatePath;
		filePath << "Kernel Driver/TEMPLATEINFO";
		file.SetTo(filePath.GetFullPath(), B_CREATE_FILE | B_READ_WRITE);
		file.WriteString("TYPE=Driver\n");
		
		filePath = templatePath;
		filePath << "Shared Library or Addon/TEMPLATEINFO";
		file.SetTo(filePath.GetFullPath(), B_CREATE_FILE | B_READ_WRITE);
		file.WriteString("TYPE=Shared\n");
		
		filePath = templatePath;
		filePath << "Static Library/TEMPLATEINFO";
		file.SetTo(filePath.GetFullPath(), B_CREATE_FILE | B_READ_WRITE);
		file.WriteString("TYPE=Static\n");
		
		file.Unset();
	}
}

/**
 * 合并Units目录下的所有profile
 */
void MergeProfiles(const char *filePath)
{
    ifstream ifs(filePath);
    TextFile profiles;
    string pathBase="D:\\Games\\Warcraft III\\Maps\\MapHack\\DotAHackS7\\MapFiles\\Units\\", fileName;
    while (ifs>>fileName)
    {
        profiles.load(pathBase+fileName);
    }
    profiles.save("D:\\Games\\Warcraft III\\Maps\\MapHack\\DotAHackS7\\MapTools\\output\\FuncAndStrings.txt");
}

/**
 * 从总Profile中读取每个小酒店的名称和英雄列表
 */
void GetHeroList(const char *profilePath)
{
    TextFile profile;
    string trvernList[] = {"n01B","n01P","n0GK","n0LJ","n01N","n007","n005","n0LI","n008","n0GJ","n01D","n0LH"};
    profile.load("D:\\Games\\Warcraft III\\Maps\\MapHack\\DotAHackS7\\MapTools\\conf\\FuncAndStrings.txt");
    for (int i=0; i<sizeof(trvernList); i++)
    {
        ObjectIdentity trvern_id;
        trvern_id.set_id(trvernList[i].c_str());
    }
}

Session::Session(const TextFile& tf)
{
	ystdex::ifile_iterator i(*tf.GetPtr());

	while(!tf.CheckEOF())
	{
		if(YB_UNLIKELY(is_undereferenceable(i)))
			throw LoggedEvent("Bad Source!", Critical);
		llex.ParseByte(*i);
		++i;
	}
}

void Seq::ToFASTAFile(TextFile &File) const
	{
	File.PutFormat(">%s\n", m_ptrName);
	unsigned uColCount = Length();
	for (unsigned n = 0; n < uColCount; ++n)
		{
		if (n > 0 && n%60 == 0)
			File.PutString("\n");
		File.PutChar(at(n));
		}
	File.PutString("\n");
	}

void LoadAssemblyFile(const std::wstring& fileName, TextFile::Encoding encoding)
{
	tTextData Text;
	int num = 0;

	AddFileName((char*)convertWStringToUtf8(fileName).c_str());
	Global.IncludeNestingLevel++;

	if (Global.IncludeNestingLevel == ASSEMBLER_INCLUDE_NESTING_LEVEL)
	{
		Logger::printError(Logger::Error,L"Maximum include nesting level reached");
		return;
	}

	TextFile input;
	if (input.open(fileName,TextFile::Read,encoding) == false)
	{
		Logger::printError(Logger::Error,L"Could not open file");
		return;
	}

	while (!input.atEnd())
	{
		Global.FileInfo.LineNumber++;
		Global.FileInfo.TotalLineCount++;

		if (GetLine(input,Text.buffer) == false) continue;
		if (Text.buffer.size() == 0) continue;
		
		Text.buffer = Global.symbolTable.insertEquations(Text.buffer,Global.FileInfo.FileNum,Global.Section);

		if (CheckEquLabel(Text.buffer) == false)
		{
			Text.buffer = checkLabel(Text.buffer,false);
			splitLine(Text.buffer,Text.name,Text.params);
			if (Text.name.empty()) continue;

			if (ParseMacro(input,Text.name,Text.params) == true) continue;
			if (Arch->AssembleDirective(Text.name,Text.params) == false)
			{
				Arch->AssembleOpcode(Text.name,Text.params);
			}
		}

		if (Logger::hasFatalError())
			return;
	}
	
	Logger::printQueue();
	Global.IncludeNestingLevel--;
	input.close();
}

static PlankResult plonk_TextFileInternal_TextFileQueue_NextFuntion (PlankMulitFileReaderRef p)
{
    if (! p->currentFile)
        p->currentFile = pl_File_CreateAndInit();
    
    TextFileQueue& queue = *static_cast<TextFileQueue*> (p->source);
    TextFile textFile = queue.pop();

    pl_File_DeInit (p->currentFile);
    textFile.disownPeer (p->currentFile);
    
    return PlankResult_OK;
}

  void EDTAFile::store(const String& filename, const FeatureMap& map) const
  {
    TextFile tf;
    tf.addLine("RT\tm/z\tintensity\tcharge");

    for (Size i = 0; i < map.size(); ++i)
    {
      const Feature& f = map[i];
      tf.addLine(String(f.getRT()) + "\t" + f.getMZ() + "\t" + f.getIntensity() + "\t" + f.getCharge());
    }

    tf.store(filename);

  }

TagBox::TagBox(ToolPanel *panel, wxWindowID id, const wxString& label, const wxPoint& pos, const wxSize& size, wxString boxname, wxString modpath)
	: wxComboBox(panel, id, label, wxDefaultPosition, size)
{
	wxString filename, filepath;
	wxString readline, tag, text;
	TextFile opfile;
	bool check;

	path = modpath;
	name = boxname;
	diagbox = NULL;
	labelset = false;
	tag = "";

	if(panel->mainwin) diagbox = panel->mainwin->diagbox;

	diagbox->Write("\nTagBox init " + name + "\n");

	// tag history load
	if(name == "") {
		diagbox->Write("Tag file not set\n");
		return;
	}
	filename =  name + "tags.ini";
	check = opfile.Open(path + "/Tags/" + filename);
	if(!check) {
		if(diagbox) diagbox->Write("No tag history\n");
		return;
	}

	diagbox->Write("Reading tag history " + filename + "\n");

	readline = opfile.ReadLine();

	while(!readline.IsEmpty()) {
		//diagbox->Write("Readline " + readline + "\n");
		readline = readline.AfterFirst(' ');
		readline.Trim();
		tag = readline;
		Insert(tag, 0);
		//diagbox->Write("Insert " + tag + "\n");
		readline = opfile.ReadLine();
	}

	opfile.Close();	
	SetLabel(tag);
	diagbox->Write(name + " " + tag + "\n");
	if(tag != "") labelset = true;
}

  /**
   * Loads the user entered batchlist file into a private variable for later use
   *
   * @param file The batchlist file to load
   *
   *  @history 2010-03-26 Sharmila Prasad - Remove the restriction of the number of
   *           columns in the batchlist file to 10.
   * @throws Isis::IException::User - The batchlist does not contain any data
   */
  void UserInterface::LoadBatchList(const QString file) {
    // Read in the batch list
    TextFile temp;
    try {
      temp.Open(file);
    }
    catch (IException &e) {
      QString msg = "The batchlist file [" + file
                   + "] could not be opened";
      throw IException(IException::User, msg, _FILEINFO_);
    }

    p_batchList.resize(temp.LineCount());

    for(int i = 0; i < temp.LineCount(); i ++) {
      QString t;
      temp.GetLine(t);

      // Convert tabs to spaces but leave tabs inside quotes alone
      t = IString(t).Replace("\t", " ", true).ToQt();

      t = IString(t).Compress().ToQt().trimmed();
      // Allow " ," " , " or ", " as a valid single seperator
      t = IString(t).Replace(" ,", ",", true).ToQt();
      t = IString(t).Replace(", ", ",", true).ToQt();
      // Convert all spaces to "," the use "," as delimiter
      t = IString(t).Replace(" ", ",", true).ToQt();
      int j = 0;

      QStringList tokens = t.split(",");

      foreach(QString token, tokens) {
        // removes quotes from tokens. NOTE: also removes escaped quotes.
        token = token.remove(QRegExp("[\"']"));
        p_batchList[i].push_back(token);
        j ++ ;
      }

      p_batchList[i].resize(j);
      // Every row in the batchlist must have the same number of columns
      if(i == 0)
        continue;
      if(p_batchList[i - 1].size() != p_batchList[i].size()) {
        QString msg =
          "The number of columns must be constant in batchlist";
        throw IException(IException::User, msg, _FILEINFO_);
      }
    }

void MainFrame::MainLoad()
{
	long numdat;
	int i, check, boxindex;

	wxString filename, filepath;
	wxString readline, numstring;

	TextFile infile;
	wxPoint pos;
    wxSize size;

	//filepath = GetPath();
	filepath = "Init//";

	// Box Load
	filename = "mainbox.ini";

	check = infile.Open(filepath + filename);
	if(!check) return;
	readline = infile.ReadLine();
	//tofp.WriteLine(readline);
	while(!readline.IsEmpty()) {
		numstring = readline.BeforeFirst(' ');
		numstring.ToLong(&numdat);
		boxindex = numdat;
		if(boxindex >= toolset->numtools) break;

		pos.x = ReadNextData(&readline);
		pos.y = ReadNextData(&readline);
		size.x = ReadNextData(&readline);
		size.y = ReadNextData(&readline);
		if(toolset->box[boxindex]->servant) toolset->box[boxindex]->visible = (bool)ReadNextData(&readline);
		else toolset->box[boxindex]->visible = true;

		if(pos.x >= -5000 && pos.x < 5000 && pos.y >= -5000 && pos.y < 5000) toolset->box[boxindex]->mpos = pos;
		if(size.x >= 50 && size.x < 2000 && size.y >= 50 && size.y < 2000) toolset->box[boxindex]->boxsize = size;

		readline = infile.ReadLine();          // Read next line
		//tofp.WriteLine(readline);
	}
	infile.Close();

	for(i=0; i<toolset->numtools; i++) {
		toolset->box[i]->ReSize();
		toolset->box[i]->Show(toolset->box[i]->visible);
	}
}

	bool Geometry::TextWriter::operator()( Geometry const & geometry, TextFile & file )
	{
		bool result{ true };

		if ( geometry.getMesh() )
		{
			Logger::logInfo( m_tabs + cuT( "Writing Geometry " ) + geometry.getName() );
			result = file.writeText( cuT( "\n" ) + m_tabs + cuT( "object \"" ) + geometry.getName() + cuT( "\"\n" ) ) > 0
					   && file.writeText( m_tabs + cuT( "{\n" ) ) > 0;
			castor::TextWriter< Geometry >::checkError( result, "Geometry name" );

			if ( result )
			{
				result = MovableObject::TextWriter{ m_tabs + cuT( "\t" ) }( geometry, file );
			}

			if ( result )
			{
				result = RenderedObject::TextWriter{ m_tabs + cuT( "\t" ) }( geometry, file );
			}

			if ( result )
			{
				result = file.writeText( m_tabs + cuT( "\tmesh \"" ) + geometry.getMesh()->getName() + cuT( "\"\n" ) ) > 0;
				castor::TextWriter< Geometry >::checkError( result, "Geometry mesh" );
			}

			if ( result )
			{
				result = file.writeText( m_tabs + cuT( "\tmaterials\n" ) ) > 0
						   && file.writeText( m_tabs + cuT( "\t{\n" ) ) > 0;
				castor::TextWriter< Geometry >::checkError( result, "Geometry materials" );

				if ( result )
				{
					uint16_t index{ 0u };

					for ( auto submesh : *geometry.getMesh() )
					{
						result &= file.writeText( m_tabs + cuT( "\t\tmaterial " ) + string::toString( index++ ) + cuT( " \"" ) + geometry.getMaterial( *submesh )->getName() + cuT( "\"\n" ) ) > 0;
						castor::TextWriter< Geometry >::checkError( result, "Geometry material" );
					}

					if ( result )
					{
						result = file.writeText( m_tabs + cuT( "\t}\n" ) ) > 0;
					}
				}
			}

			if ( result )
			{
				result = file.writeText( m_tabs + cuT( "}\n" ) ) > 0;
			}
		}

		return result;
	}

		Bool TextFile::WriteText(CStr fileName, CStr text, UInt textLength, Exception* out_ex)
		{
			ASSERT_PARAMETER(fileName);
			ASSERT_PARAMETER(text);

			TextFile *textFile = TextFile::Create(fileName, out_ex);
			Bool result = false;

			if(textFile)
			{
				result = textFile->Write(text, textLength, out_ex); 
				GALATEA_DELETE_PTR(textFile);
			}

			return result;
		}

void SeqVect::FromFASTAFile(TextFile &File)
	{
	Clear();

	FILE *f = File.GetStdioFile();
	for (;;)
		{
		char *Label;
		unsigned uLength;
		char *SeqData = GetFastaSeq(f, &uLength, &Label);
		if (0 == SeqData)
			return;
		Seq *ptrSeq = new Seq;

		for (unsigned i = 0; i < uLength; ++i)
			{
			char c = SeqData[i];
			ptrSeq->push_back(c);
			}

		ptrSeq->SetName(Label);
		push_back(ptrSeq);

		delete[] SeqData;
		delete[] Label;
		}
	}

void GraphBase::BaseStore(wxString path, wxString tag)
{
	int i;
	TextFile outfile;
	wxString text, filename, filetag;

	filename = "gbase-" + tag + ".dat";

	//outfile.New(initpath + "/Graphs/" + filename);
	outfile.New(path + "/" + filename);
	for(i=0; i<numgraphs; i++) {
		outfile.WriteLine(graphstore[i].StoreDat(GetTag(i)));
		//outfile.WriteLine(text.Format
	}
	outfile.Close();
}