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QTIM Tutorials

Jupyter notebooks and other tutorials for medical imaging and deep learning, courtesy of the QTIM lab.

Prerequisites

• Git - to download this repository
• Python 3 distribution. We recommend Anaconda: https://www.anaconda.com/download/
• Spyder 3 (Python IDE) - this comes with Anaconda, useful for larger projects
• Jupyter - also comes with Anaconda

Dependencies

• scikit-image - pip install scikit-image
• scikit-learn - pip install scikit-learn
• TensorFlow 1.5+ - pip install tensorflow
• Keras 2+ - pip install keras

If you have an NVIDIA GPU and would like to use it, then you'll need to also install:

• Up-to-date NVIDIA drivers
• NVIDIA CUDA toolkit
• CuDNN
• tensorflow-gpu