本文整理汇总了C++中H5Dclose函数的典型用法代码示例。如果您正苦于以下问题：C++ H5Dclose函数的具体用法？C++ H5Dclose怎么用？C++ H5Dclose使用的例子？那么恭喜您, 这里精选的函数代码示例或许可以为您提供帮助。
在下文中一共展示了H5Dclose函数的20个代码示例，这些例子默认根据受欢迎程度排序。您可以为喜欢或者感觉有用的代码点赞，您的评价将有助于我们的系统推荐出更棒的C++代码示例。
示例1: forAll
forAll(scalarFields_, fieldI)
{
Info<< " fieldWriteScalar: " << scalarFields_[fieldI] << endl;
// Lookup field
const volScalarField& field = obr_.lookupObject<volScalarField>
(
scalarFields_[fieldI]
);
// Initialize a plain continous array for the data
ioScalar* scalarData;
scalarData = new ioScalar[field.size()];
// Loop through the field and construct the array
forAll(field, iter)
{
scalarData[iter] = field[iter];
}
// Create the different datasets (needs to be done collectively)
char datasetName[80];
hsize_t dimsf[1];
hid_t fileSpace;
hid_t dsetID;
hid_t plistID;
hid_t plistDCreate;
forAll(nCells_, proc)
{
// Create the dataspace for the dataset
dimsf[0] = nCells_[proc];
fileSpace = H5Screate_simple(1, dimsf, NULL);
// Set property to create parent groups as neccesary
plistID = H5Pcreate(H5P_LINK_CREATE);
H5Pset_create_intermediate_group(plistID, 1);
// Set chunking, compression and other HDF5 dataset properties
plistDCreate = H5Pcreate(H5P_DATASET_CREATE);
dsetSetProps(1, sizeof(ioScalar), nCells_[proc], plistDCreate);
// Create the dataset for points
sprintf
(
datasetName,
"FIELDS/%s/processor%i/%s",
mesh_.time().timeName().c_str(),
proc,
scalarFields_[fieldI].c_str()
);
dsetID = H5Dcreate2
(
fileID_,
datasetName,
H5T_SCALAR,
fileSpace,
plistID,
plistDCreate,
H5P_DEFAULT
);
H5Dclose(dsetID);
H5Pclose(plistID);
H5Pclose(plistDCreate);
H5Sclose(fileSpace);
}
开发者ID:hakostra，项目名称:IOH5Write，代码行数:71，代码来源:h5WriteField.C
示例2: create_nbit_dsets_float
/*-------------------------------------------------------------------------
* Function: create_nbit_dsets_float
*
* Purpose: Create a dataset of FLOAT datatype with nbit filter
*
* Return: Success: 0
* Failure: -1
*
* Programmer: Raymond Lu
* 29 March 2011
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
int
create_nbit_dsets_float(hid_t fid, hid_t fsid, hid_t msid)
{
hid_t dataset; /* dataset handles */
hid_t datatype;
hid_t dcpl;
size_t precision, offset;
float data[NX][NY]; /* data to write */
float fillvalue = -2.2f;
hsize_t chunk[RANK] = {CHUNK0, CHUNK1};
int i, j;
/*
* Data and output buffer initialization.
*/
for (j = 0; j < NX; j++) {
for (i = 0; i < NY; i++)
data[j][i] = ((float)(i + j + 1))/3;
}
/*
* Create the dataset creation property list, add the Scale-Offset
* filter, set the chunk size, and set the fill value.
*/
if((dcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0)
TEST_ERROR
if(H5Pset_nbit(dcpl) < 0)
TEST_ERROR
if(H5Pset_chunk(dcpl, RANK, chunk) < 0)
TEST_ERROR
if(H5Pset_fill_value(dcpl, H5T_NATIVE_FLOAT, &fillvalue) < 0)
TEST_ERROR
/* Define user-defined single-precision floating-point type for dataset.
* A 20-bit little-endian data type. */
if((datatype = H5Tcopy(H5T_IEEE_F32LE)) < 0)
TEST_ERROR
if(H5Tset_fields(datatype, (size_t)26, (size_t)20, (size_t)6, (size_t)7, (size_t)13) < 0)
TEST_ERROR
offset = 7;
if(H5Tset_offset(datatype,offset) < 0)
TEST_ERROR
precision = 20;
if(H5Tset_precision(datatype,precision) < 0)
TEST_ERROR
if(H5Tset_size(datatype, (size_t)4) < 0)
TEST_ERROR
if(H5Tset_ebias(datatype, (size_t)31) < 0)
TEST_ERROR
/*
* Create a new dataset within the file using defined dataspace,
* user-defined datatype, and default dataset creation properties.
*/
if((dataset = H5Dcreate2(fid, DATASETNAME22, datatype, fsid,
H5P_DEFAULT, dcpl, H5P_DEFAULT)) < 0)
TEST_ERROR
/*
* Write the data to the dataset using default transfer properties.
*/
if(H5Dwrite(dataset, H5T_NATIVE_FLOAT, msid, fsid, H5P_DEFAULT, data) < 0)
TEST_ERROR
/* Close dataset */
if(H5Dclose(dataset) < 0)
TEST_ERROR
/* Now create a dataset with a big-endian type */
if(H5Tset_order(datatype, H5T_ORDER_BE) < 0)
TEST_ERROR
if((dataset = H5Dcreate2(fid, DATASETNAME23, datatype, fsid,
H5P_DEFAULT, dcpl, H5P_DEFAULT)) < 0)
TEST_ERROR
if(H5Dwrite(dataset, H5T_NATIVE_FLOAT, msid, fsid, H5P_DEFAULT, data) < 0)
TEST_ERROR
if(H5Dclose(dataset) < 0)
TEST_ERROR
/*
* Close/release resources.
*/
if(H5Pclose(dcpl) < 0)
TEST_ERROR
//.........这里部分代码省略.........
开发者ID:AndyHuang7601，项目名称:EpicGames-UnrealEngine，代码行数:101，代码来源:gen_cross.c
示例3: create_deflate_dsets_float
/*-------------------------------------------------------------------------
* Function: create_deflate_dsets_float
*
* Purpose: Create a dataset of FLOAT datatype with deflate filter
*
* Return: Success: 0
* Failure: -1
*
* Programmer: Raymond Lu
* 29 March 2011
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
int
create_deflate_dsets_float(hid_t fid, hid_t fsid, hid_t msid)
{
#ifdef H5_HAVE_FILTER_DEFLATE
hid_t dataset; /* dataset handles */
hid_t dcpl;
float data[NX][NY]; /* data to write */
float fillvalue = -2.2f;
hsize_t chunk[RANK] = {CHUNK0, CHUNK1};
int i, j;
/*
* Data and output buffer initialization.
*/
for (j = 0; j < NX; j++) {
for (i = 0; i < NY; i++)
data[j][i] = ((float)(i + j + 1))/3;
}
/*
* Create the dataset creation property list, add the Scale-Offset
* filter, set the chunk size, and set the fill value.
*/
if((dcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0)
TEST_ERROR
if(H5Pset_deflate (dcpl, 6) < 0)
TEST_ERROR
if(H5Pset_chunk(dcpl, RANK, chunk) < 0)
TEST_ERROR
if(H5Pset_fill_value(dcpl, H5T_NATIVE_FLOAT, &fillvalue) < 0)
TEST_ERROR
/*
* Create a new dataset within the file using defined dataspace, little
* endian datatype and default dataset creation properties.
*/
if((dataset = H5Dcreate2(fid, DATASETNAME16, H5T_IEEE_F32LE, fsid,
H5P_DEFAULT, dcpl, H5P_DEFAULT)) < 0)
TEST_ERROR
/*
* Write the data to the dataset using default transfer properties.
*/
if(H5Dwrite(dataset, H5T_NATIVE_FLOAT, msid, fsid, H5P_DEFAULT, data) < 0)
TEST_ERROR
/* Close dataset */
if(H5Dclose(dataset) < 0)
TEST_ERROR
/* Now create a dataset with a big-endian type */
if((dataset = H5Dcreate2(fid, DATASETNAME17, H5T_IEEE_F32BE, fsid,
H5P_DEFAULT, dcpl, H5P_DEFAULT)) < 0)
TEST_ERROR
if(H5Dwrite(dataset, H5T_NATIVE_FLOAT, msid, fsid, H5P_DEFAULT, data) < 0)
TEST_ERROR
if(H5Dclose(dataset) < 0)
TEST_ERROR
/*
* Close/release resources.
*/
if(H5Pclose(dcpl) < 0)
TEST_ERROR
#else /* H5_HAVE_FILTER_DEFLATE */
const char *not_supported= "Deflate filter is not enabled. Can't create the dataset.";
puts(not_supported);
#endif /* H5_HAVE_FILTER_DEFLATE */
return 0;
#ifdef H5_HAVE_FILTER_DEFLATE
error:
H5E_BEGIN_TRY {
H5Pclose(dcpl);
H5Dclose(dataset);
} H5E_END_TRY;
return -1;
#endif /* H5_HAVE_FILTER_DEFLATE */
}
开发者ID:AndyHuang7601，项目名称:EpicGames-UnrealEngine，代码行数:98，代码来源:gen_cross.c
示例4: WriteHDF5file
bool WriteHDF5file(char* fname, dtype* outArray, int* dims, float* pixel,
float* expo, float* waveLen, float* dist, float* beamxy,
float* flux, bool compress, unsigned short* badmask)
{
#ifdef _HDF5_H
hid_t out_type_id = H5T_NATIVE_FLOAT;
hid_t file_id = H5Fcreate(fname, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
hid_t gid = H5Gcreate1(file_id,"LCLS",0);
hid_t dataspace_id, dataset_id;
int ndims = 1;
hsize_t dimsH[2];
dimsH[0] = 1;
dimsH[1] = 0;
dataspace_id = H5Screate_simple(1, dimsH, NULL);
dataset_id = H5Dcreate1(gid, "detectorPosition", out_type_id, dataspace_id, H5P_DEFAULT);
if(H5Dwrite(dataset_id, out_type_id, H5S_ALL, H5S_ALL,H5P_DEFAULT, dist)< 0)
printf("Error writing 1D data to file\n");
H5Dclose(dataset_id);
dataset_id = H5Dcreate1(gid, "photon_wavelength_A", out_type_id, dataspace_id, H5P_DEFAULT);
if(H5Dwrite(dataset_id, out_type_id, H5S_ALL, H5S_ALL,H5P_DEFAULT, waveLen)< 0)
printf("Error writing 1D data to file\n");
H5Dclose(dataset_id);
dataset_id = H5Dcreate1(gid, "exposure_s", out_type_id, dataspace_id, H5P_DEFAULT);
if(H5Dwrite(dataset_id, out_type_id, H5S_ALL, H5S_ALL,H5P_DEFAULT, expo)< 0)
printf("Error writing 1D data to file\n");
H5Dclose(dataset_id);
dataset_id = H5Dcreate1(gid, "pixelX_m", out_type_id, dataspace_id, H5P_DEFAULT);
if(H5Dwrite(dataset_id, out_type_id, H5S_ALL, H5S_ALL,H5P_DEFAULT, &pixel[0])< 0)
printf("Error writing 1D data to file\n");
H5Dclose(dataset_id);
dataset_id = H5Dcreate1(gid, "pixelY_m", out_type_id, dataspace_id, H5P_DEFAULT);
if(H5Dwrite(dataset_id, out_type_id, H5S_ALL, H5S_ALL,H5P_DEFAULT, &pixel[1])< 0)
printf("Error writing 1D data to file\n");
H5Dclose(dataset_id);
dataset_id = H5Dcreate1(gid, "flux_ph_s", out_type_id, dataspace_id, H5P_DEFAULT);
if(H5Dwrite(dataset_id, out_type_id, H5S_ALL, H5S_ALL,H5P_DEFAULT, flux)< 0)
printf("Error writing 1D data to file\n");
H5Dclose(dataset_id);
dataset_id = H5Dcreate1(gid, "beamX_px", out_type_id, dataspace_id, H5P_DEFAULT);
if(H5Dwrite(dataset_id, out_type_id, H5S_ALL, H5S_ALL,H5P_DEFAULT, &beamxy[0])< 0)
printf("Error writing 1D data to file\n");
H5Dclose(dataset_id);
dataset_id = H5Dcreate1(gid, "beamY_px", out_type_id, dataspace_id, H5P_DEFAULT);
if(H5Dwrite(dataset_id, out_type_id, H5S_ALL, H5S_ALL,H5P_DEFAULT, &beamxy[1])< 0)
printf("Error writing 1D data to file\n");
H5Dclose(dataset_id);
H5Sclose(dataspace_id);
ndims = 2;
dimsH[0] = dims[1];
dimsH[1] = dims[0];
hid_t gid2 = H5Gcreate1(file_id,"data",0);
dataspace_id = H5Screate_simple(ndims, dimsH, NULL);
//COMPRESSION
hid_t dcpl = H5Pcreate (H5P_DATASET_CREATE);
// hsize_t chunk[2] = {dimsH[0], dimsH[1]};
//#ifdef ZLIB_H
//CASS hsize_t chunk[2] = {40,2};
hsize_t chunk[2] = {64, 64};
if (compress)
{ H5Pset_deflate (dcpl, 9);
H5Pset_chunk (dcpl, 2, chunk);
}
//#endif
// H5Pset_szip (dcpl, H5_SZIP_NN_OPTION_MASK, 8);
// H5Pset_chunk (dcpl, 2, chunk);
dataset_id = H5Dcreate(file_id, "/data/data", out_type_id, dataspace_id,
H5P_DEFAULT, dcpl, H5P_DEFAULT);
// dataset_id = H5Dcreate1(file_id, "/data/data", out_type_id, dataspace_id, H5P_DEFAULT);
if(H5Dwrite(dataset_id, out_type_id, H5S_ALL, H5S_ALL, H5P_DEFAULT, outArray)< 0)
printf("Error writing 2D data to file\n");
H5Dclose(dataset_id);
H5Sclose(dataspace_id);
H5Gclose(gid2);
//Here badmask
H5Gclose(gid);
H5Fclose(file_id);
return true;
#endif
return false;
}
开发者ID:shibom，项目名称:scripts_sls，代码行数:92，代码来源:cbf2hdf5.cpp
示例5: create_attrs_3
/*-------------------------------------------------------------------------
* Function: create_attrs_3
*
* Purpose: Attempts to create some attributes for each dataset in a
* loop.
*
* Return: Success: 0
*
* Failure: -1
*
* Programmer: Raymond Lu
* Friday, Oct 3, 2003
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
static herr_t
create_attrs_3(void)
{
hid_t file, dataset, attr;
char filename[128];
char dset_name[64];
char attr_name[128];
int loop_num;
int i, j, k;
p_time attr_t = {0, 0, 0, 1000000, 0, ""};
p_time open_t = {0, 0, 0, 1000000, 0, "H5Dopen2"};
p_time close_t = {0, 0, 0, 1000000, 0, ""};
#ifdef H5_HAVE_PARALLEL
/* need the rank for printing data */
int mpi_rank;
if(facc_type == FACC_MPIO)
MPI_Comm_rank(MPI_COMM_WORLD, &mpi_rank);
#endif /*H5_HAVE_PARALLEL*/
h5_fixname(FILENAME[2], fapl, filename, sizeof filename);
if ((file=H5Fcreate(filename, H5F_ACC_TRUNC, H5P_DEFAULT,
fapl)) < 0)
goto error;
if(create_dsets(file) < 0)
goto error;
/*
* Create some(user specifies the number) attributes for each dataset
* in a loop
*/
loop_num = NUM_ATTRS/BATCH_ATTRS;
for(i = 0; i < loop_num; i++) {
for(j = 0; j < NUM_DSETS; j++) {
sprintf(dset_name, "dataset %d", j);
open_t.start = retrieve_time();
if((dataset = H5Dopen2(file, dset_name, H5P_DEFAULT)) < 0)
goto error;
perf(&open_t, open_t.start, retrieve_time());
for(k = 0; k < BATCH_ATTRS; k++) {
sprintf(attr_name, "some attrs for each dset %d %d", i, k);
attr_t.start = retrieve_time();
if((attr = H5Acreate2(dataset, attr_name, H5T_NATIVE_DOUBLE,
small_space, H5P_DEFAULT, H5P_DEFAULT)) < 0)
goto error;
if(H5Aclose(attr) < 0)
goto error;
perf(&attr_t, attr_t.start, retrieve_time());
if(flush_attr && H5Fflush(file, H5F_SCOPE_LOCAL) < 0)
goto error;
} /* end for */
close_t.start = retrieve_time();
if(H5Dclose(dataset) < 0)
goto error;
perf(&close_t, close_t.start, retrieve_time());
if(flush_dset && H5Fflush(file, H5F_SCOPE_LOCAL) < 0)
goto error;
} /* end for */
} /* end for */
#ifdef H5_HAVE_PARALLEL
if(facc_type == FACC_MPIO)
MPI_Barrier(MPI_COMM_WORLD);
#endif /*H5_HAVE_PARALLEL*/
#ifdef H5_HAVE_PARALLEL
/* only process 0 reports if parallel */
if (facc_type == FACC_DEFAULT || (facc_type != FACC_DEFAULT && MAINPROCESS))
#endif /*H5_HAVE_PARALLEL*/
{
/* Calculate the average time */
open_t.avg = open_t.total / (loop_num*NUM_DSETS);
close_t.avg = close_t.total / (loop_num*NUM_DSETS);
attr_t.avg = attr_t.total / (NUM_ATTRS*NUM_DSETS);
/* Print out the performance result */
fprintf(stderr, "3. Create %d attributes for each of %d existing datasets for %d times\n",
BATCH_ATTRS, NUM_DSETS, loop_num);
//.........这里部分代码省略.........
开发者ID:ElaraFX，项目名称:hdf5，代码行数:101，代码来源:perf_meta.c
示例6: write_data2
//.........这里部分代码省略.........
Matrix2[y][z][x].re = Re(C[z][BETA][y][x]);
Matrix2[y][z][x].im = Im(C[z][BETA][y][x]);
IMatrix1[y][z][x].re = Re(IC[z][ALPHA][y][x]); /* storing solved solutions to Matrix */
IMatrix1[y][z][x].im = Im(IC[z][ALPHA][y][x]);
IMatrix2[y][z][x].re = Re(IC[z][BETA][y][x]);
IMatrix2[y][z][x].im = Im(IC[z][BETA][y][x]);
}
}
}
sprintf(filename, "data_t=%d.h5", n);
/* create File data.h5 for three data sets */
file_id1 =
H5Fcreate(filename, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
/* create the dataspace */
fid1 = H5Screate_simple(3, fdim, NULL);
fid2 = H5Screate_simple(1, fdim2, NULL);
/* create datasets with name u v w */
dataset_a =
H5Dcreate1(file_id1, "/data_alpha", complex_id, fid1, H5P_DEFAULT);
dataset_b =
H5Dcreate1(file_id1, "/data_beta", complex_id, fid1, H5P_DEFAULT);
dataset_ia =
H5Dcreate1(file_id1, "/data_ialpha", complex_id, fid1,
H5P_DEFAULT);
dataset_ib =
H5Dcreate1(file_id1, "/data_ibeta", complex_id, fid1, H5P_DEFAULT);
dataset_Nx =
H5Dcreate1(file_id1, "data_Nx", H5T_STD_I32LE, fid2, H5P_DEFAULT);
dataset_Ny =
H5Dcreate1(file_id1, "data_Ny", H5T_STD_I32LE, fid2, H5P_DEFAULT);
dataset_Nz =
H5Dcreate1(file_id1, "data_Nz", H5T_STD_I32LE, fid2, H5P_DEFAULT);
dataset_dt =
H5Dcreate1(file_id1, "data_dt", H5T_IEEE_F64LE, fid2, H5P_DEFAULT);
dataset_Re =
H5Dcreate1(file_id1, "data_Re", H5T_IEEE_F64LE, fid2, H5P_DEFAULT);
dataset_mpg =
H5Dcreate1(file_id1, "data_mpg", H5T_IEEE_F64LE, fid2,
H5P_DEFAULT);
/* write data to corresponding datasets */
ret =
H5Dwrite(dataset_a, complex_id, H5S_ALL, fid1, H5P_DEFAULT,
Matrix1);
ret =
H5Dwrite(dataset_b, complex_id, H5S_ALL, fid1, H5P_DEFAULT,
Matrix2);
ret =
H5Dwrite(dataset_ia, complex_id, H5S_ALL, fid1, H5P_DEFAULT,
IMatrix1);
ret =
H5Dwrite(dataset_ib, complex_id, H5S_ALL, fid1, H5P_DEFAULT,
IMatrix2);
ret =
H5Dwrite(dataset_Nx, H5T_NATIVE_INT, H5S_ALL, fid2, H5P_DEFAULT,
&Nx);
ret =
H5Dwrite(dataset_Ny, H5T_NATIVE_INT, H5S_ALL, fid2, H5P_DEFAULT,
&Ny);
ret =
H5Dwrite(dataset_Nz, H5T_NATIVE_INT, H5S_ALL, fid2, H5P_DEFAULT,
&Nz);
ret =
H5Dwrite(dataset_dt, H5T_IEEE_F64LE, H5S_ALL, fid2, H5P_DEFAULT,
&dt);
ret =
H5Dwrite(dataset_Re, H5T_IEEE_F64LE, H5S_ALL, fid2, H5P_DEFAULT,
&re);
ret =
H5Dwrite(dataset_mpg, H5T_IEEE_F64LE, H5S_ALL, fid2, H5P_DEFAULT,
&mpg);
/* close datasets and file */
ret = H5Dclose(dataset_a);
ret = H5Dclose(dataset_b);
ret = H5Dclose(dataset_ia);
ret = H5Dclose(dataset_ib);
ret = H5Dclose(dataset_Nx);
ret = H5Dclose(dataset_Ny);
ret = H5Dclose(dataset_Nz);
ret = H5Dclose(dataset_dt);
ret = H5Dclose(dataset_Re);
ret = H5Dclose(dataset_mpg);
ret = H5Sclose(fid1);
ret = H5Sclose(fid2);
ret = H5Fclose(file_id1);
return (EXIT_SUCCESS);
}
开发者ID:huahbo，项目名称:shadow-channel，代码行数:101，代码来源:write_data2.c
示例7: if
/*
* Write 2D data to HDF5 file
*/
void cData2d::writeHDF5(char* filename){
// Figure out the HDF5 data type
hid_t out_type_id = 0;
if(sizeof(tData2d) == sizeof(float))
out_type_id = H5T_NATIVE_FLOAT;
else if(sizeof(tData2d) == sizeof(double))
out_type_id = H5T_NATIVE_DOUBLE;
else {
printf("2dData::writeHDF5: unsuppoted data type\n");
exit(1);
}
// Create the file and data group
hid_t file_id;
file_id = H5Fcreate(filename, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
H5Gcreate1(file_id,"data",0);
// Data space dimensions
int ndims = 2;
hsize_t dims[ndims];
dims[0] = ny;
dims[1] = nx;
// Write the data
hid_t dataspace_id;
hid_t dataset_id;
dataspace_id = H5Screate_simple(ndims, dims, NULL);
dataset_id = H5Dcreate1(file_id, "/data/data", out_type_id, dataspace_id, H5P_DEFAULT);
if(H5Dwrite(dataset_id,out_type_id , H5S_ALL, H5S_ALL,H5P_DEFAULT, data)< 0){
printf("2dData::writeHDF5: Error writing data to file\n");
exit(1);
}
// Close and exit
H5Dclose(dataset_id);
// Cleanup stale IDs
hid_t ids[256];
int n_ids = H5Fget_obj_ids(file_id, H5F_OBJ_ALL, 256, ids);
for (long i=0; i<n_ids; i++ ) {
hid_t id;
H5I_type_t type;
id = ids[i];
type = H5Iget_type(id);
if ( type == H5I_GROUP )
H5Gclose(id);
if ( type == H5I_DATASET )
H5Dclose(id);
if ( type == H5I_DATASPACE )
H5Sclose(id);
//if ( type == H5I_DATATYPE )
// H5Dclose(id);
}
H5Fclose(file_id);
}
开发者ID:antonbarty，项目名称:cheetah-old，代码行数:64，代码来源:data2d.cpp
示例8: test_multi_compat
/*-------------------------------------------------------------------------
* Function: test_multi_compat
*
* Purpose: Tests the backward compatibility for MULTI driver.
* See if we can open files created with v1.6 library.
* The source file was created by the test/file_handle.c
* of the v1.6 library. This test verifies the fix for
* Issue 2598. In v1.6 library, there was EOA for the whole
* MULTI file saved in the super block. We took it out in
* v1.8 library because it's meaningless for the MULTI file.
* v1.8 library saves the EOA for the metadata file, instead.
*
* Return: Success: 0
* Failure: -1
*
* Programmer: Raymond Lu
* 21 June 2011
*
*-------------------------------------------------------------------------
*/
static herr_t
test_multi_compat(void)
{
hid_t file=(-1), fapl, dset=(-1), space=(-1);
char newname[1024];
char filename_s[1024], newname_s[1024];
char filename_r[1024], newname_r[1024];
H5FD_mem_t mt, memb_map[H5FD_MEM_NTYPES];
hid_t memb_fapl[H5FD_MEM_NTYPES];
haddr_t memb_addr[H5FD_MEM_NTYPES];
const char *memb_name[H5FD_MEM_NTYPES];
char sv[H5FD_MEM_NTYPES][32];
hsize_t dims[2]={MULTI_SIZE, MULTI_SIZE};
int i, j;
int buf[MULTI_SIZE][MULTI_SIZE];
TESTING("MULTI file driver backward compatibility");
/* Set file access property list for MULTI driver */
fapl = h5_fileaccess();
HDmemset(memb_map, 0, sizeof memb_map);
HDmemset(memb_fapl, 0, sizeof memb_fapl);
HDmemset(memb_name, 0, sizeof memb_name);
HDmemset(memb_addr, 0, sizeof memb_addr);
HDmemset(sv, 0, sizeof sv);
for(mt=H5FD_MEM_DEFAULT; mt<H5FD_MEM_NTYPES; H5_INC_ENUM(H5FD_mem_t,mt))
memb_map[mt] = H5FD_MEM_SUPER;
memb_map[H5FD_MEM_DRAW] = H5FD_MEM_DRAW;
memb_fapl[H5FD_MEM_SUPER] = H5P_DEFAULT;
sprintf(sv[H5FD_MEM_SUPER], "%%s-%c.h5", 's');
memb_name[H5FD_MEM_SUPER] = sv[H5FD_MEM_SUPER];
memb_addr[H5FD_MEM_SUPER] = 0;
memb_fapl[H5FD_MEM_DRAW] = H5P_DEFAULT;
sprintf(sv[H5FD_MEM_DRAW], "%%s-%c.h5", 'r');
memb_name[H5FD_MEM_DRAW] = sv[H5FD_MEM_DRAW];
memb_addr[H5FD_MEM_DRAW] = HADDR_MAX/2;
if(H5Pset_fapl_multi(fapl, memb_map, memb_fapl, memb_name, memb_addr, TRUE)<0)
TEST_ERROR;
h5_fixname(FILENAME[9], fapl, newname, sizeof newname);
/* Make copy for the data file in the build directory, to protect the
* original file in the source directory */
sprintf(filename_s, "%s-%c.h5", MULTI_COMPAT_BASENAME, 's');
sprintf(newname_s, "%s-%c.h5", FILENAME[9], 's');
h5_make_local_copy(filename_s, newname_s);
sprintf(filename_r, "%s-%c.h5", MULTI_COMPAT_BASENAME, 'r');
sprintf(newname_r, "%s-%c.h5", FILENAME[9], 'r');
h5_make_local_copy(filename_r, newname_r);
/* Reopen the file for read only. Verify 1.8 library can open file
* created with 1.6 library. */
if((file=H5Fopen(newname, H5F_ACC_RDONLY, fapl)) < 0)
TEST_ERROR;
if((dset = H5Dopen2(file, DSET1_NAME, H5P_DEFAULT)) < 0)
TEST_ERROR;
if(H5Dclose(dset) < 0)
TEST_ERROR;
if(H5Fclose(file) < 0)
TEST_ERROR;
/* Make sure we can reopen the file for read and write */
if((file=H5Fopen(newname, H5F_ACC_RDWR, fapl)) < 0)
TEST_ERROR;
if((dset = H5Dopen2(file, DSET1_NAME, H5P_DEFAULT)) < 0)
TEST_ERROR;
if(H5Dclose(dset) < 0)
TEST_ERROR;
//.........这里部分代码省略.........
开发者ID:FilipeMaia，项目名称:hdf5，代码行数:101，代码来源:vfd.c
示例9: test_direct
//.........这里部分代码省略.........
* 4 currently and the size of the file should be between 3 & 4 file buffer
* sizes..
*/
if(file_size < (FBSIZE * 3) || file_size >= (FBSIZE * 4))
TEST_ERROR;
/* Allocate aligned memory for data set 1. For data set 1, everything is aligned including
* memory address, size of data, and file address. */
if(0 != HDposix_memalign(&points, (size_t)FBSIZE, (size_t)(DSET1_DIM1 * DSET1_DIM2 * sizeof(int))))
TEST_ERROR;
if(0 != HDposix_memalign(&check, (size_t)FBSIZE, (size_t)(DSET1_DIM1 * DSET1_DIM2 * sizeof(int))))
TEST_ERROR;
/* Initialize the dset1 */
p1 = points;
for(i = n = 0; i < DSET1_DIM1; i++)
for(j = 0; j < DSET1_DIM2; j++)
*p1++ = n++;
/* Create the data space1 */
dims1[0] = DSET1_DIM1;
dims1[1] = DSET1_DIM2;
if((space1 = H5Screate_simple(2, dims1, NULL)) < 0)
TEST_ERROR;
/* Create the dset1 */
if((dset1 = H5Dcreate2(file, DSET1_NAME, H5T_NATIVE_INT, space1, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
TEST_ERROR;
/* Write the data to the dset1 */
if(H5Dwrite(dset1, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, points) < 0)
TEST_ERROR;
if(H5Dclose(dset1) < 0)
TEST_ERROR;
if((dset1 = H5Dopen2(file, DSET1_NAME, H5P_DEFAULT)) < 0)
TEST_ERROR;
/* Read the data back from dset1 */
if(H5Dread(dset1, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, check) < 0)
TEST_ERROR;
/* Check that the values read are the same as the values written */
p1 = points;
p2 = check;
for(i = 0; i < DSET1_DIM1; i++)
for(j = 0; j < DSET1_DIM2; j++)
if(*p1++ != *p2++) {
H5_FAILED();
printf(" Read different values than written in data set 1.\n");
printf(" At index %d,%d\n", i, j);
TEST_ERROR;
} /* end if */
/* Create the data space2. For data set 2, memory address and data size are not aligned. */
dims2[0] = DSET2_DIM;
if((space2 = H5Screate_simple(1, dims2, NULL)) < 0)
TEST_ERROR;
/* Create the dset2 */
if((dset2 = H5Dcreate2(file, DSET2_NAME, H5T_NATIVE_INT, space2, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
TEST_ERROR;
/* Write the data to the dset1 */
if(H5Dwrite(dset2, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, wdata2) < 0)
开发者ID:FilipeMaia，项目名称:hdf5，代码行数:67，代码来源:vfd.c
示例10: read_file
//.........这里部分代码省略.........
dims[0] = pc;
hdf5_dataspace_in_memory = H5Screate_simple(rank, dims, NULL);
start[0] = pcsum;
start[1] = 0;
count[0] = pc;
count[1] = get_values_per_blockelement(blocknr);
pcsum += pc;
H5Sselect_hyperslab(hdf5_dataspace_in_file, H5S_SELECT_SET,
start, NULL, count, NULL);
switch (get_datatype_in_block(blocknr))
{
case 0:
hdf5_datatype = H5Tcopy(H5T_NATIVE_UINT);
break;
case 1:
hdf5_datatype = H5Tcopy(H5T_NATIVE_FLOAT);
break;
case 2:
hdf5_datatype = H5Tcopy(H5T_NATIVE_UINT64);
break;
}
H5Dread(hdf5_dataset, hdf5_datatype, hdf5_dataspace_in_memory,
hdf5_dataspace_in_file, H5P_DEFAULT, CommBuffer);
H5Tclose(hdf5_datatype);
H5Sclose(hdf5_dataspace_in_memory);
H5Sclose(hdf5_dataspace_in_file);
H5Dclose(hdf5_dataset);
}
#endif
}
if(ThisTask == readTask && task != readTask)
MPI_Ssend(CommBuffer, bytes_per_blockelement * pc, MPI_BYTE, task, TAG_PDATA,
MPI_COMM_WORLD);
if(ThisTask != readTask && task == ThisTask)
MPI_Recv(CommBuffer, bytes_per_blockelement * pc, MPI_BYTE, readTask,
TAG_PDATA, MPI_COMM_WORLD, &status);
if(ThisTask == task)
{
empty_read_buffer(blocknr, nstart + offset, pc, type);
offset += pc;
}
n_for_this_task -= pc;
}
while(n_for_this_task > 0);
}
}
}
if(ThisTask == readTask)
{
if(All.ICFormat == 1 || All.ICFormat == 2)
{
SKIP2;
if(blksize1 != blksize2)
{
开发者ID:zighany，项目名称:gadget2-AccretionDiscs，代码行数:67，代码来源:read_ic.c
示例11: arma_H5Dclose
herr_t arma_H5Dclose(hid_t dataset_id)
{
return H5Dclose(dataset_id);
}
开发者ID:bingo4508，项目名称:Deep-Learning，代码行数:4，代码来源:wrapper.cpp
示例12: main
int
main (void)
{
hid_t file, dataset2; /* file and dataset handles */
hid_t datatype16; /* handles */
hid_t dataspace2; /* handles */
hsize_t dimsf2[2]; /* dataset dimensions */
hid_t aid; /* dataspace identifiers */
hid_t attr2; /* attribute identifiers */
herr_t status;
int16_t data2[SIZE][SIZE]; /* data to write*/
int i, j, n;
n = 0;
for(i = 0; i < SIZE; i++)
for(j = 0; j < SIZE; j++)
data2[i][j] = n++;
/*
* Assigns minimal and maximal values of int16 to data2 and
* they will be used to check boudary values.
*/
data2[0][0] = -32768;
data2[1][1] = 32767;
/*
* Create a new file using H5F_ACC_TRUNC access,
* default file creation properties, and default file
* access properties.
*/
file = H5Fcreate(H5FILE_NAME, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
/*
* Set each dimension size to 0.
*/
dimsf2[0] = 0;
dimsf2[1] = 0;
dataspace2 = H5Screate_simple(2, dimsf2, NULL);
/*
* Define datatype for the data in the file.
*/
datatype16 = H5Tcopy(H5T_NATIVE_SHORT);
/*
* Create a new dataset within the file using defined dataspace and
* datatype and default dataset creation properties.
*/
dataset2 = H5Dcreate2(file, "dataset_2d", datatype16, dataspace2,
H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
/*
* Write the data although it has no effect because each dim size is 0.
*/
status = H5Dwrite(dataset2, H5T_NATIVE_SHORT, H5S_ALL, H5S_ALL,
H5P_DEFAULT, data2);
/*
* Create 2D attributes.
*/
attr2 = H5Acreate2(dataset2, "attribute_2d", datatype16, dataspace2,
H5P_DEFAULT, H5P_DEFAULT);
/*
* Write the data although it has no effect because each dim size is 0.
*/
status = H5Awrite(attr2, datatype16, data2);
H5Aclose(attr2);
/*
* Close/release resources.
*/
H5Dclose(dataset2);
H5Tclose(datatype16);
H5Sclose(dataspace2);
H5Fclose(file);
return 0;
}
开发者ID:OPENDAP，项目名称:hdf5_handler，代码行数:79，代码来源:t_space_zero.c
示例13: main
int
main(void)
{
hid_t fid;
hid_t fapl;
hid_t did;
hid_t space;
hsize_t dim[1] = {DIM};
unsigned data[DIM];
unsigned u;
herr_t ret; /* Generic return value */
/* Initialize the data */
for(u = 0; u < DIM; u++)
data[u] = u;
/* Create a FAPL with the metadata and small data aggregators turned off */
fapl = H5Pcreate(H5P_FILE_ACCESS);
assert(fapl > 0);
ret = H5Pset_meta_block_size(fapl, (hsize_t)0);
assert(ret >= 0);
ret = H5Pset_small_data_block_size(fapl, (hsize_t)0);
assert(ret >= 0);
/* Create file */
fid = H5Fcreate(FILENAME, H5F_ACC_TRUNC, H5P_DEFAULT, fapl);
assert(fid > 0);
/* Close FAPL */
ret = H5Pclose(fapl);
assert(ret >= 0);
/* Create dataspace */
space = H5Screate_simple(1, dim, NULL);
assert(space > 0);
/* Create dataset #1 */
did = H5Dcreate2(fid, "dset1", H5T_NATIVE_UINT, space, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
assert(did > 0);
ret = H5Dwrite(did, H5T_NATIVE_UINT, H5S_ALL, H5S_ALL, H5P_DEFAULT, data);
assert(ret >= 0);
ret = H5Dclose(did);
assert(ret >= 0);
/* Create dataset #2 */
did = H5Dcreate2(fid, "dset2", H5T_NATIVE_UINT, space, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
assert(did > 0);
ret = H5Dwrite(did, H5T_NATIVE_UINT, H5S_ALL, H5S_ALL, H5P_DEFAULT, data);
assert(ret >= 0);
ret = H5Dclose(did);
assert(ret >= 0);
/* Close dataspace */
ret = H5Sclose(space);
assert(ret >= 0);
/* Close file */
ret = H5Fclose(fid);
assert(ret >= 0);
return 0;
}
开发者ID:ElaraFX，项目名称:hdf5，代码行数:62，代码来源:gen_specmetaread.c
示例14: getProvider
//.........这里部分代码省略.........
nDimFile = nobjEman;
else
nDimFile = ( rank<3 || !isStack )?1:dims[0] ;
if (select_img > nDimFile)
REPORT_ERROR(ERR_INDEX_OUTOFBOUNDS, formatString("readHDF5 (%s): Image number %lu exceeds stack size %lu", filename.c_str(), select_img, nDimFile));
aDim.ndim = replaceNsize = (select_img == ALL_IMAGES)? nDimFile :1 ;
setDimensions(aDim);
//Read header only
if(dataMode == HEADER || (dataMode == _HEADER_ALL && aDim.ndim > 1))
return errCode;
// EMAN stores each image in a separate dataset
if ( provider.first == EMAN )
select_img = 1;
size_t imgStart = IMG_INDEX(select_img);
size_t imgEnd = (select_img != ALL_IMAGES) ? imgStart + 1 : aDim.ndim;
MD.clear();
MD.resize(imgEnd - imgStart,MDL::emptyHeader);
if (dataMode < DATA) // Don't read data if not necessary but read the header
return errCode;
if ( H5Pget_layout(cparms) == H5D_CONTIGUOUS ) //We can read it directly
readData(fimg, select_img, datatype, 0);
else // We read it by hyperslabs
{
// Allocate memory for image data (Assume xdim, ydim, zdim and ndim are already set
//if memory already allocated use it (no resize allowed)
mdaBase->coreAllocateReuse();
hid_t memspace;
hsize_t offset[4]; // Hyperslab offset in the file
hsize_t count[4]; // Size of the hyperslab in the file
// Define the offset and count of the hyperslab to be read.
switch (rank)
{
case 4:
count[0] = 1;
case 3:
// if (stack)
count[rank-3] = aDim.zdim;
offset[rank-2] = 0;
case 2:
count[rank-2] = aDim.ydim;
offset[rank-2] = 0;
break;
}
count[rank-1] = aDim.xdim;
offset[rank-1] = 0;
aDim.xdim = dims[rank-1];
aDim.ydim = (rank>1)?dims[rank-2]:1;
aDim.zdim = (rank == 4)?dims[1]:1;
// size_t nDimFile = (rank>2)?dims[0]:1 ;
// Define the memory space to read a hyperslab.
memspace = H5Screate_simple(rank,count,NULL);
size_t data = (size_t) this->mdaBase->getArrayPointer();
size_t pad = aDim.zyxdim*gettypesize(myT());
for (size_t idx = imgStart, imN = 0; idx < imgEnd; ++idx, ++imN)
{
// Set the offset of the hyperslab to be read
offset[0] = idx;
if ( H5Sselect_hyperslab(filespace, H5S_SELECT_SET, offset, NULL,
count, NULL) < 0 )
REPORT_ERROR(ERR_IO_NOREAD, formatString("readHDF5: Error selecting hyperslab %d from filename %s",
imgStart, filename.c_str()));
// movePointerTo(ALL_SLICES,imN);
// Read
if ( H5Dread(dataset, H5Datatype(myT()), memspace, filespace,
H5P_DEFAULT, (void*)(data + pad*imN)) < 0 )
REPORT_ERROR(ERR_IO_NOREAD,formatString("readHDF5: Error reading hyperslab %d from filename %s",
imgStart, filename.c_str()));
}
H5Sclose(memspace);
}
H5Pclose(cparms);
H5Sclose(filespace);
H5Dclose(dataset);
return errCode;
}
开发者ID:I2PC，项目名称:scipion，代码行数:101，代码来源:rwHDF5.cpp
示例15: main
int
main (void)
{
hid_t vfile, file, src_space, mem_space, vspace,
vdset, dset; /* Handles */
hid_t dcpl;
herr_t status;
hsize_t vdsdims[3] = {4*DIM0_1, VDSDIM1, VDSDIM2},
vdsdims_max[3] = {VDSDIM0, VDSDIM1, VDSDIM2},
dims[3] = {DIM0_1, DIM1, DIM2},
extdims[3] = {2*DIM0_1, DIM1, DIM2},
chunk_dims[3] = {DIM0_1, DIM1, DIM2},
dims_max[3] = {DIM0, DIM1, DIM2},
vdsdims_out[3],
vdsdims_max_out[3],
start[3], /* Hyperslab parameters */
stride[3],
count[3],
src_count[3],
block[3];
hsize_t start_out[3], /* Hyperslab parameter out */
stride_out[3],
count_out[3],
block_out[3];
int i, j, k;
H5D_layout_t layout; /* Storage layout */
size_t num_map; /* Number of mappings */
ssize_t len; /* Length of the string; also a return value */
char *filename;
char *dsetname;
int wdata[DIM0_1*DIM1*DIM2];
int rdata[80][10][10];
int a_rdata[20][10][10];
/*
* Create source files and datasets. This step is optional.
*/
for (i=0; i < PLANE_STRIDE; i++) {
/*
* Initialize data for i-th source dataset.
*/
for (j = 0; j < DIM0_1*DIM1*DIM2; j++) wdata[j] = i+1;
/*
* Create the source files and datasets. Write data to each dataset and
* close all resources.
*/
file = H5Fcreate (SRC_FILE[i], H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
src_space = H5Screate_simple (RANK, dims, dims_max);
dcpl = H5Pcreate(H5P_DATASET_CREATE);
status = H5Pset_chunk (dcpl, RANK, chunk_dims);
dset = H5Dcreate2 (file, SRC_DATASET[i], H5T_NATIVE_INT, src_space, H5P_DEFAULT,
dcpl, H5P_DEFAULT);
status = H5Dwrite (dset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT,
wdata);
status = H5Sclose (src_space);
status = H5Pclose (dcpl);
status = H5Dclose (dset);
status = H5Fclose (file);
}
vfile = H5Fcreate (VFILE, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
/* Create VDS dataspace. */
vspace = H5Screate_simple (RANK, vdsdims, vdsdims_max);
/* Create dataspaces for the source dataset. */
src_space = H5Screate_simple (RANK, dims, dims_max);
/* Create VDS creation property */
dcpl = H5Pcreate (H5P_DATASET_CREATE);
/* Initialize hyperslab values */
start[0] = 0;
start[1] = 0;
start[2] = 0;
stride[0] = PLANE_STRIDE; /* we will select every fifth plane in VDS */
stride[1] = 1;
stride[2] = 1;
count[0] = H5S_UNLIMITED;
count[1] = 1;
count[2] = 1;
src_count[0] = H5S_UNLIMITED;
src_count[1] = 1;
src_count[2] = 1;
block[0] = 1;
block[1] = DIM1;
block[2] = DIM2;
/*
* Build the mappings
*
*/
status = H5Sselect_hyperslab (src_space, H5S_SELECT_SET, start, NULL, src_count, block);
for (i=0; i < PLANE_STRIDE; i++) {
status = H5Sselect_hyperslab (vspace, H5S_SELECT_SET, start, stride, count, block);
status = H5Pset_virtual (dcpl, vspace, SRC_FILE[i], SRC_DATASET[i], src_space);
start[0]++;
//.........这里部分代码省略.........
开发者ID:Starlink，项目名称:hdf5，代码行数:101，代码来源:h5_vds-percival-unlim.c
示例16: test_core
//.........这里部分代码省略.........
* Changes won't be saved in file. */
if(H5Pset_fapl_core(fapl, (size_t)CORE_INCREMENT, FALSE) < 0)
TEST_ERROR;
if((file=H5Fopen(filename, H5F_ACC_RDWR, fapl)) < 0)
TEST_ERROR;
/* Allocate memory for data set. */
if(NULL == (points = (int *)HDmalloc(DSET1_DIM1 * DSET1_DIM2 * sizeof(int))))
TEST_ERROR;
if(NULL == (check = (int *)HDmalloc(DSET1_DIM1 * DSET1_DIM2 * sizeof(int))))
TEST_ERROR;
/* Initialize the dset1 */
p1 = points;
for(i = n = 0; i < DSET1_DIM1; i++)
for(j = 0; j < DSET1_DIM2; j++)
*p1++ = n++;
/* Create the data space1 */
dims1[0] = DSET1_DIM1;
dims1[1] = DSET1_DIM2;
if((space1 = H5Screate_simple(2, dims1, NULL)) < 0)
TEST_ERROR;
/* Create the dset1 */
if((dset1 = H5Dcreate2(file, DSET1_NAME, H5T_NATIVE_INT, space1, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
TEST_ERROR;
/* Write the data to the dset1 */
if(H5Dwrite(dset1, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, points) < 0)
TEST_ERROR;
if(H5Dclose(dset1) < 0)
TEST_ERROR;
if((dset1 = H5Dopen2(file, DSET1_NAME, H5P_DEFAULT)) < 0)
TEST_ERROR;
/* Read the data back from dset1 */
if(H5Dread(dset1, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, check) < 0)
TEST_ERROR;
/* Check that the values read are the same as the values written */
p1 = points;
p2 = check;
for(i = 0; i < DSET1_DIM1; i++)
for(j = 0; j < DSET1_DIM2; j++)
if(*p1++ != *p2++) {
H5_FAILED();
printf(" Read different values than written in data s
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