func InitConfig() {
	viper.SetConfigName("scds")
	viper.SetConfigType("yaml")

	viper.SetEnvPrefix("scds")
	viper.AutomaticEnv()

	// Replaces underscores with periods when mapping environment variables.
	viper.SetEnvKeyReplacer(strings.NewReplacer(".", "_"))

	// Set non-zero defaults. Nested options take a lower precedence than
	// dot-delimited ones, so namespaced options are defined here as maps.
	viper.SetDefault("mongo", map[string]interface{}{
		"uri": "localhost/scds",
	})

	viper.SetDefault("http", map[string]interface{}{
		"host": "localhost",
		"port": 5000,
	})

	viper.SetDefault("smtp", map[string]interface{}{
		"host": "localhost",
		"port": 25,
	})

	// Read the default config file from the working directory.
	dir, err := os.Getwd()

	if err != nil {
		log.Fatal(err)
	}

	viper.AddConfigPath(dir)
}

func init() {
	viper.SetConfigType("yaml")
	viper.AutomaticEnv()

	envReplacer := strings.NewReplacer(".", "_")
	viper.SetEnvKeyReplacer(envReplacer)
}

// Start entry point for chaincodes bootstrap.
func Start(cc Chaincode) error {
	viper.SetEnvPrefix("OPENCHAIN")
	viper.AutomaticEnv()
	replacer := strings.NewReplacer(".", "_")
	viper.SetEnvKeyReplacer(replacer)

	flag.StringVar(&peerAddress, "peer.address", "", "peer address")

	flag.Parse()

	chaincodeLogger.Debug("Peer address: %s", getPeerAddress())

	// Establish connection with validating peer
	clientConn, err := newPeerClientConnection()
	if err != nil {
		chaincodeLogger.Error(fmt.Sprintf("Error trying to connect to local peer: %s", err))
		return fmt.Errorf("Error trying to connect to local peer: %s", err)
	}

	chaincodeLogger.Debug("os.Args returns: %s", os.Args)

	chaincodeSupportClient := pb.NewChaincodeSupportClient(clientConn)

	err = chatWithPeer(chaincodeSupportClient, cc)

	return err
}

// Start entry point for chaincodes bootstrap.
func Start(cc Chaincode) error {
	viper.SetEnvPrefix("OPENCHAIN")
	viper.AutomaticEnv()
	replacer := strings.NewReplacer(".", "_")
	viper.SetEnvKeyReplacer(replacer)
	/*
		viper.SetConfigName("openchain") // name of config file (without extension)
		viper.AddConfigPath("./../../../")        // path to look for the config file in
		err := viper.ReadInConfig()      // Find and read the config file
		if err != nil {                  // Handle errors reading the config file
			panic(fmt.Errorf("Fatal error config file: %s \n", err))
		}
	*/
	fmt.Printf("peer.address: %s\n", getPeerAddress())

	// Establish connection with validating peer
	clientConn, err := newPeerClientConnection()
	if err != nil {
		return fmt.Errorf("Error trying to connect to local peer: %s", err)
	}

	fmt.Printf("os.Args returns: %s\n", os.Args)

	chaincodeSupportClient := pb.NewChaincodeSupportClient(clientConn)

	//err = c.Run(chaincodeSupportClient)
	//if err != nil {
	//}
	// Handle message exchange with validating peer
	err = chatWithPeer(chaincodeSupportClient, cc)

	return err
}

// Setup sets up defaults for viper configuration options and
// overrides these values with the values from the given configuration file
// if it is not empty. Those values again are overwritten by environment
// variables.
func Setup(configFilePath string) error {
	viper.Reset()

	// Expect environment variables to be prefix with "ALMIGHTY_".
	viper.SetEnvPrefix("ALMIGHTY")

	// Automatically map environment variables to viper values
	viper.AutomaticEnv()

	// To override nested variables through environment variables, we
	// need to make sure that we don't have to use dots (".") inside the
	// environment variable names.
	// To override foo.bar you need to set ALM_FOO_BAR
	viper.SetEnvKeyReplacer(strings.NewReplacer(".", "_"))

	viper.SetTypeByDefaultValue(true)
	setConfigDefaults()

	// Read the config
	// Explicitly specify which file to load config from
	if configFilePath != "" {
		viper.SetConfigFile(configFilePath)
		viper.SetConfigType("yaml")
		err := viper.ReadInConfig() // Find and read the config file
		if err != nil {             // Handle errors reading the config file
			return fmt.Errorf("Fatal error config file: %s \n", err)
		}
	}

	return nil
}

// Start entry point for chaincodes bootstrap.
func Start(cc Chaincode) error {
	viper.SetEnvPrefix("CORE")
	viper.AutomaticEnv()
	replacer := strings.NewReplacer(".", "_")
	viper.SetEnvKeyReplacer(replacer)

	flag.StringVar(&peerAddress, "peer.address", "", "peer address")

	flag.Parse()

	chaincodeLogger.Debug("Peer address: %s", getPeerAddress())

	// Establish connection with validating peer
	clientConn, err := newPeerClientConnection()
	if err != nil {
		chaincodeLogger.Error(fmt.Sprintf("Error trying to connect to local peer: %s", err))
		return fmt.Errorf("Error trying to connect to local peer: %s", err)
	}

	chaincodeLogger.Debug("os.Args returns: %s", os.Args)

	chaincodeSupportClient := pb.NewChaincodeSupportClient(clientConn)

	// Establish stream with validating peer
	stream, err := chaincodeSupportClient.Register(context.Background())
	if err != nil {
		return fmt.Errorf("Error chatting with leader at address=%s:  %s", getPeerAddress(), err)
	}

	chaincodename := viper.GetString("chaincode.id.name")
	err = chatWithPeer(chaincodename, stream, cc)

	return err
}

func main() {
	// For environment variables.
	viper.SetEnvPrefix(cmdRoot)
	viper.AutomaticEnv()
	replacer := strings.NewReplacer(".", "_")
	viper.SetEnvKeyReplacer(replacer)

	// Define command-line flags that are valid for all peer commands and
	// subcommands.
	mainFlags := mainCmd.PersistentFlags()
	mainFlags.BoolVarP(&versionFlag, "version", "v", false, "Display current version of fabric peer server")

	mainFlags.String("logging-level", "", "Default logging level and overrides, see core.yaml for full syntax")
	viper.BindPFlag("logging_level", mainFlags.Lookup("logging-level"))
	testCoverProfile := ""
	mainFlags.StringVarP(&testCoverProfile, "test.coverprofile", "", "coverage.cov", "Done")

	var alternativeCfgPath = os.Getenv("PEER_CFG_PATH")
	if alternativeCfgPath != "" {
		logger.Infof("User defined config file path: %s", alternativeCfgPath)
		viper.AddConfigPath(alternativeCfgPath) // Path to look for the config file in
	} else {
		viper.AddConfigPath("./") // Path to look for the config file in
		// Path to look for the config file in based on GOPATH
		gopath := os.Getenv("GOPATH")
		for _, p := range filepath.SplitList(gopath) {
			peerpath := filepath.Join(p, "src/github.com/hyperledger/fabric/peer")
			viper.AddConfigPath(peerpath)
		}
	}

	// Now set the configuration file.
	viper.SetConfigName(cmdRoot) // Name of config file (without extension)

	err := viper.ReadInConfig() // Find and read the config file
	if err != nil {             // Handle errors reading the config file
		panic(fmt.Errorf("Fatal error when reading %s config file: %s\n", cmdRoot, err))
	}

	mainCmd.AddCommand(version.Cmd())
	mainCmd.AddCommand(node.Cmd())
	mainCmd.AddCommand(network.Cmd())
	mainCmd.AddCommand(chaincode.Cmd())

	runtime.GOMAXPROCS(viper.GetInt("peer.gomaxprocs"))

	// Init the crypto layer
	if err := crypto.Init(); err != nil {
		panic(fmt.Errorf("Failed to initialize the crypto layer: %s", err))
	}

	// On failure Cobra prints the usage message and error string, so we only
	// need to exit with a non-0 status
	if mainCmd.Execute() != nil {
		os.Exit(1)
	}
	logger.Info("Exiting.....")
}

func init() {
	envReplacer = strings.NewReplacer(".", "_")

	// Configure Viper to search for all configurations
	// in the system environment variables
	viper.SetEnvPrefix(envPrefix)
	viper.AutomaticEnv()
	viper.SetEnvKeyReplacer(envReplacer)
}

func setupViper() {
	viper.SetEnvPrefix(constants.MinikubeEnvPrefix)
	// Replaces '-' in flags with '_' in env variables
	// e.g. show-libmachine-logs => $ENVPREFIX_SHOW_LIBMACHINE_LOGS
	viper.SetEnvKeyReplacer(strings.NewReplacer("-", "_"))
	viper.AutomaticEnv()

	viper.SetDefault(config.WantUpdateNotification, true)
	viper.SetDefault(config.ReminderWaitPeriodInHours, 24)
	setFlagsUsingViper()
}

// SetupCoreYAMLConfig sets up configurations for testing
func SetupCoreYAMLConfig(coreYamlPath string) {
	viper.SetConfigName("core")
	viper.SetEnvPrefix("CORE")
	viper.AddConfigPath(coreYamlPath)
	viper.SetEnvKeyReplacer(strings.NewReplacer(".", "_"))
	viper.AutomaticEnv()
	err := viper.ReadInConfig()
	if err != nil { // Handle errors reading the config file
		panic(fmt.Errorf("Fatal error config file: %s \n", err))
	}
}

func init() {
	// set default log level to Error
	viper.SetDefault("logging", map[string]interface{}{"level": 2})

	viper.SetEnvPrefix(envPrefix)
	viper.SetEnvKeyReplacer(strings.NewReplacer(".", "_"))
	viper.AutomaticEnv()

	// Setup flags
	flag.StringVar(&configFile, "config", "", "Path to configuration file")
	flag.BoolVar(&debug, "debug", false, "show the version and exit")
}

func main() {
	rootCmd := &cobra.Command{
		Use:   "mantl-api",
		Short: "runs the mantl-api",
		Run: func(cmd *cobra.Command, args []string) {
			start()
		},
		PersistentPreRun: func(cmd *cobra.Command, args []string) {
			readConfigFile()
			setupLogging()
		},
	}

	rootCmd.PersistentFlags().String("log-level", "info", "one of debug, info, warn, error, or fatal")
	rootCmd.PersistentFlags().String("log-format", "text", "specify output (text or json)")
	rootCmd.PersistentFlags().String("consul", "http://localhost:8500", "Consul Api address")
	rootCmd.PersistentFlags().String("marathon", "", "Marathon Api address")
	rootCmd.PersistentFlags().String("marathon-user", "", "Marathon Api user")
	rootCmd.PersistentFlags().String("marathon-password", "", "Marathon Api password")
	rootCmd.PersistentFlags().Bool("marathon-no-verify-ssl", false, "Marathon SSL verification")
	rootCmd.PersistentFlags().String("mesos", "", "Mesos Api address")
	rootCmd.PersistentFlags().String("mesos-principal", "", "Mesos principal for framework authentication")
	rootCmd.PersistentFlags().String("mesos-secret", "", "Mesos secret for framework authentication")
	rootCmd.PersistentFlags().Bool("mesos-no-verify-ssl", false, "Mesos SSL verification")
	rootCmd.PersistentFlags().String("listen", ":4001", "mantl-api listen address")
	rootCmd.PersistentFlags().String("zookeeper", "", "Comma-delimited list of zookeeper servers")
	rootCmd.PersistentFlags().Bool("force-sync", false, "Force a synchronization of all sources")
	rootCmd.PersistentFlags().String("config-file", "", "The path to a configuration file")

	for _, flags := range []*pflag.FlagSet{rootCmd.PersistentFlags()} {
		err := viper.BindPFlags(flags)
		if err != nil {
			log.WithField("error", err).Fatal("could not bind flags")
		}
	}

	viper.SetEnvPrefix("mantl_api")
	viper.SetEnvKeyReplacer(strings.NewReplacer("-", "_"))
	viper.AutomaticEnv()

	syncCommand := &cobra.Command{
		Use:   "sync",
		Short: "Synchronize universe repositories",
		Long:  "Forces a synchronization of all configured sources",
		Run: func(cmd *cobra.Command, args []string) {
			sync(nil, true)
		},
	}
	rootCmd.AddCommand(syncCommand)

	rootCmd.Execute()
}

// TODO: Need to look at whether this is just too much going on.
func init() {
	// enable ability to specify config file via flag
	RootCmd.PersistentFlags().StringVar(&cfgFile, "config", "", "config file (default is $HOME/.trackello.yaml)")
	if cfgFile != "" {
		viper.SetConfigFile(cfgFile)
	}
	viper.SetConfigName(".trackello") // name of config file (without extension)

	// Set Environment Variables
	viper.SetEnvPrefix("trackello")
	viper.SetEnvKeyReplacer(strings.NewReplacer("-", "_")) // replace environment variables to underscore (_) from hyphen (-)
	if err := viper.BindEnv("appkey", trackello.TRACKELLO_APPKEY); err != nil {
		panic(err)
	}
	if err := viper.BindEnv("token", trackello.TRACKELLO_TOKEN); err != nil {
		panic(err)
	}
	if err := viper.BindEnv("board", trackello.TRACKELLO_PREFERRED_BOARD); err != nil {
		panic(err)
	}
	viper.AutomaticEnv() // read in environment variables that match every time Get() is called

	// Add Configuration Paths
	if cwd, err := os.Getwd(); err == nil {
		viper.AddConfigPath(cwd)
	}
	viper.AddConfigPath("$HOME") // adding home directory as first search path

	// If a config file is found, read it in.
	if err := viper.ReadInConfig(); err == nil {
		fmt.Println("Using config file:", viper.ConfigFileUsed())
	}

	RootCmd.AddCommand(configCmd)

	RootCmd.PersistentFlags().StringVar(&trelloAppKey, "appkey", "", "Trello Application Key")
	if err := viper.BindPFlag("appkey", RootCmd.PersistentFlags().Lookup("appkey")); err != nil {
		panic(err)
	}
	RootCmd.PersistentFlags().StringVar(&trelloToken, "token", "", "Trello Token")
	if err := viper.BindPFlag("token", RootCmd.PersistentFlags().Lookup("token")); err != nil {
		panic(err)
	}
	RootCmd.PersistentFlags().StringVar(&preferredBoard, "board", "", "Preferred Board ID")
	if err := viper.BindPFlag("board", RootCmd.PersistentFlags().Lookup("board")); err != nil {
		panic(err)
	}
	viper.RegisterAlias("preferredBoard", "board")
}

// SetChaincodeLoggingLevel sets the chaincode logging level to the value
// of CORE_LOGGING_CHAINCODE set from core.yaml by chaincode_support.go
func SetChaincodeLoggingLevel() {
	viper.SetEnvPrefix("CORE")
	viper.AutomaticEnv()
	replacer := strings.NewReplacer(".", "_")
	viper.SetEnvKeyReplacer(replacer)

	chaincodeLogLevelString := viper.GetString("logging.chaincode")
	chaincodeLogLevel, err := LogLevel(chaincodeLogLevelString)

	if err == nil {
		SetLoggingLevel(chaincodeLogLevel)
	} else {
		chaincodeLogger.Infof("error with chaincode log level: %s level= %s\n", err, chaincodeLogLevelString)
	}
}

func main() {
	cnf := config.NewConfig()
	cnf.AddFlags(pflag.CommandLine)
	cnf.InitFlags()

	viper.SetEnvPrefix("tinysyslog")
	replacer := strings.NewReplacer("-", "_")
	viper.SetEnvKeyReplacer(replacer)
	viper.AutomaticEnv()

	InitLogging()

	server := NewServer()
	server.Run()
}

// initConfig reads in config file and ENV variables if set.
func initConfig() {
	if cfgFile != "" { // enable ability to specify config file via flag
		viper.SetConfigFile(cfgFile)
	}

	viper.SetEnvPrefix("FISSILE")

	viper.SetEnvKeyReplacer(strings.NewReplacer("-", "_"))
	viper.SetConfigName(".fissile") // name of config file (without extension)
	viper.AddConfigPath("$HOME")    // adding home directory as first search path
	viper.AutomaticEnv()            // read in environment variables that match

	// If a config file is found, read it in.
	if err := viper.ReadInConfig(); err == nil {
		fmt.Println("Using config file:", viper.ConfigFileUsed())
	}
}

// SetupTestConfig setup the config during test execution
func SetupTestConfig() {
	flag.Parse()

	// Now set the configuration file
	viper.SetEnvPrefix("CORE")
	viper.AutomaticEnv()
	replacer := strings.NewReplacer(".", "_")
	viper.SetEnvKeyReplacer(replacer)
	viper.SetConfigName("core")        // name of config file (without extension)
	viper.AddConfigPath("../../peer/") // path to look for the config file in
	err := viper.ReadInConfig()        // Find and read the config file
	if err != nil {                    // Handle errors reading the config file
		panic(fmt.Errorf("Fatal error config file: %s \n", err))
	}

	SetupTestLogging()
}

func SetupTestConfig() {
	viper.AddConfigPath(".")
	viper.SetEnvKeyReplacer(strings.NewReplacer(".", "_"))
	viper.AutomaticEnv()
	viper.SetDefault("peer.ledger.test.loadYAML", true)
	loadYAML := viper.GetBool("peer.ledger.test.loadYAML")
	if loadYAML {
		viper.SetConfigName("test")
		err := viper.ReadInConfig()
		if err != nil { // Handle errors reading the config file
			panic(fmt.Errorf("Fatal error config file: %s \n", err))
		}
	}
	var formatter = logging.MustStringFormatter(
		`%{color}%{time:15:04:05.000} [%{module}] %{shortfunc} [%{shortfile}] -> %{level:.4s} %{id:03x}%{color:reset} %{message}`,
	)
	logging.SetFormatter(formatter)
}

// SetupTestConfig setup the config during test execution
func SetupTestConfig() {
	runtime.GOMAXPROCS(runtime.NumCPU())
	flag.Parse()

	// Now set the configuration file
	viper.SetEnvPrefix("OPENCHAIN")
	viper.AutomaticEnv()
	replacer := strings.NewReplacer(".", "_")
	viper.SetEnvKeyReplacer(replacer)
	viper.SetConfigName("openchain") // name of config file (without extension)
	viper.AddConfigPath("./")        // path to look for the config file in
	viper.AddConfigPath("./../")     // path to look for the config file in
	err := viper.ReadInConfig()      // Find and read the config file
	if err != nil {                  // Handle errors reading the config file
		panic(fmt.Errorf("Fatal error config file: %s \n", err))
	}

	SetupTestLogging()
}

// SetChaincodeLoggingLevel sets the chaincode logging level to the value
// of CORE_LOGGING_CHAINCODE set from core.yaml by chaincode_support.go
func SetChaincodeLoggingLevel() {
	viper.SetEnvPrefix("CORE")
	viper.AutomaticEnv()
	replacer := strings.NewReplacer(".", "_")
	viper.SetEnvKeyReplacer(replacer)

	chaincodeLogLevelString := viper.GetString("logging.chaincode")
	if chaincodeLogLevelString == "" {
		shimLogLevelDefault := logging.Level(shimLoggingLevel)
		chaincodeLogger.Infof("Chaincode log level not provided; defaulting to: %s", shimLogLevelDefault)
	} else {
		chaincodeLogLevel, err := LogLevel(chaincodeLogLevelString)
		if err == nil {
			SetLoggingLevel(chaincodeLogLevel)
		} else {
			chaincodeLogger.Warningf("Error: %s for chaincode log level: %s", err, chaincodeLogLevelString)
		}
	}

}