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Python montage.read_dig_montage函数代码示例

原作者: [db:作者] 来自: [db:来源] 收藏 邀请

本文整理汇总了Python中mne.channels.montage.read_dig_montage函数的典型用法代码示例。如果您正苦于以下问题:Python read_dig_montage函数的具体用法?Python read_dig_montage怎么用?Python read_dig_montage使用的例子?那么恭喜您, 这里精选的函数代码示例或许可以为您提供帮助。



在下文中一共展示了read_dig_montage函数的13个代码示例,这些例子默认根据受欢迎程度排序。您可以为喜欢或者感觉有用的代码点赞,您的评价将有助于我们的系统推荐出更棒的Python代码示例。

示例1: test_read_dig_montage

def test_read_dig_montage():
    """Test read_dig_montage"""
    names = ['nasion', 'lpa', 'rpa', '1', '2', '3', '4', '5']
    montage = read_dig_montage(hsp, hpi, elp, names, unit='m', transform=False)
    elp_points = _read_dig_points(elp)
    hsp_points = _read_dig_points(hsp)
    hpi_points = read_mrk(hpi)
    assert_equal(montage.point_names, names)
    assert_array_equal(montage.elp, elp_points)
    assert_array_equal(montage.hsp, hsp_points)
    assert_array_equal(montage.hpi, hpi_points)
    assert_array_equal(montage.dev_head_t, np.identity(4))
    montage = read_dig_montage(hsp, hpi, elp, names,
                               transform=True, dev_head_t=True)
    # check coordinate transformation
    # nasion
    assert_almost_equal(montage.nasion[0], 0)
    assert_almost_equal(montage.nasion[2], 0)
    # lpa and rpa
    assert_allclose(montage.lpa[1:], 0, atol=1e-16)
    assert_allclose(montage.rpa[1:], 0, atol=1e-16)
    # device head transform
    dev_head_t = fit_matched_points(tgt_pts=montage.elp,
                                    src_pts=montage.hpi, out='trans')
    assert_array_equal(montage.dev_head_t, dev_head_t)
开发者ID:Famguy,项目名称:mne-python,代码行数:25,代码来源:test_montage.py


示例2: test_fif_dig_montage

def test_fif_dig_montage():
    """Test FIF dig montage support."""
    dig_montage = read_dig_montage(fif=fif_dig_montage_fname)

    # test round-trip IO
    temp_dir = _TempDir()
    fname_temp = op.join(temp_dir, 'test.fif')
    _check_roundtrip(dig_montage, fname_temp)

    # Make a BrainVision file like the one the user would have had
    with warnings.catch_warnings(record=True) as w:
        raw_bv = read_raw_brainvision(bv_fname, preload=True)
    assert_true(any('will be dropped' in str(ww.message) for ww in w))
    raw_bv_2 = raw_bv.copy()
    mapping = dict()
    for ii, ch_name in enumerate(raw_bv.ch_names[:-1]):
        mapping[ch_name] = 'EEG%03d' % (ii + 1,)
    raw_bv.rename_channels(mapping)
    for ii, ch_name in enumerate(raw_bv_2.ch_names[:-1]):
        mapping[ch_name] = 'EEG%03d' % (ii + 33,)
    raw_bv_2.rename_channels(mapping)
    raw_bv.drop_channels(['STI 014'])
    raw_bv.add_channels([raw_bv_2])

    for ii in range(2):
        if ii == 1:
            dig_montage.transform_to_head()  # should have no meaningful effect

        # Set the montage
        raw_bv.set_montage(dig_montage)

        # Check the result
        evoked = read_evokeds(evoked_fname)[0]

        assert_equal(len(raw_bv.ch_names), len(evoked.ch_names))
        for ch_py, ch_c in zip(raw_bv.info['chs'], evoked.info['chs']):
            assert_equal(ch_py['ch_name'],
                         ch_c['ch_name'].replace('EEG ', 'EEG'))
            # C actually says it's unknown, but it's not (?):
            # assert_equal(ch_py['coord_frame'], ch_c['coord_frame'])
            assert_equal(ch_py['coord_frame'], FIFF.FIFFV_COORD_HEAD)
            c_loc = ch_c['loc'].copy()
            c_loc[c_loc == 0] = np.nan
            assert_allclose(ch_py['loc'], c_loc, atol=1e-7)
        assert_dig_allclose(raw_bv.info, evoked.info)

    # Roundtrip of non-FIF start
    names = ['nasion', 'lpa', 'rpa', '1', '2', '3', '4', '5']
    montage = read_dig_montage(hsp, hpi, elp, names, transform=False)
    assert_raises(RuntimeError, montage.save, fname_temp)  # must be head coord
    montage = read_dig_montage(hsp, hpi, elp, names)
    _check_roundtrip(montage, fname_temp)
开发者ID:claire-braboszcz,项目名称:mne-python,代码行数:52,代码来源:test_montage.py


示例3: test_set_dig_montage

def test_set_dig_montage():
    """Test applying DigMontage to inst."""
    # Extensive testing of applying `dig` to info is done in test_meas_info
    # with `test_make_dig_points`.
    names = ["nasion", "lpa", "rpa", "1", "2", "3", "4", "5"]
    hsp_points = _read_dig_points(hsp)
    elp_points = _read_dig_points(elp)
    nasion, lpa, rpa = elp_points[:3]
    nm_trans = get_ras_to_neuromag_trans(nasion, lpa, rpa)
    elp_points = apply_trans(nm_trans, elp_points)
    nasion, lpa, rpa = elp_points[:3]
    hsp_points = apply_trans(nm_trans, hsp_points)

    montage = read_dig_montage(hsp, hpi, elp, names, transform=True, dev_head_t=True)
    temp_dir = _TempDir()
    fname_temp = op.join(temp_dir, "test.fif")
    montage.save(fname_temp)
    montage_read = read_dig_montage(fif=fname_temp)
    for use_mon in (montage, montage_read):
        info = create_info(["Test Ch"], 1e3, ["eeg"])
        with warnings.catch_warnings(record=True) as w:  # test ch pos not set
            _set_montage(info, use_mon)
        assert_true(all("not set" in str(ww.message) for ww in w))
        hs = np.array([p["r"] for i, p in enumerate(info["dig"]) if p["kind"] == FIFF.FIFFV_POINT_EXTRA])
        nasion_dig = np.array(
            [
                p["r"]
                for p in info["dig"]
                if all([p["ident"] == FIFF.FIFFV_POINT_NASION, p["kind"] == FIFF.FIFFV_POINT_CARDINAL])
            ]
        )
        lpa_dig = np.array(
            [
                p["r"]
                for p in info["dig"]
                if all([p["ident"] == FIFF.FIFFV_POINT_LPA, p["kind"] == FIFF.FIFFV_POINT_CARDINAL])
            ]
        )
        rpa_dig = np.array(
            [
                p["r"]
                for p in info["dig"]
                if all([p["ident"] == FIFF.FIFFV_POINT_RPA, p["kind"] == FIFF.FIFFV_POINT_CARDINAL])
            ]
        )
        hpi_dig = np.array([p["r"] for p in info["dig"] if p["kind"] == FIFF.FIFFV_POINT_HPI])
        assert_allclose(hs, hsp_points, atol=1e-7)
        assert_allclose(nasion_dig.ravel(), nasion, atol=1e-7)
        assert_allclose(lpa_dig.ravel(), lpa, atol=1e-7)
        assert_allclose(rpa_dig.ravel(), rpa, atol=1e-7)
        assert_allclose(hpi_dig, elp_points[3:], atol=1e-7)
开发者ID:mne-tools,项目名称:mne-python,代码行数:51,代码来源:test_montage.py


示例4: test_egi_dig_montage

def test_egi_dig_montage():
    """Test EGI MFF XML dig montage support."""
    dig_montage = read_dig_montage(egi=egi_dig_montage_fname, unit='m')

    # # test round-trip IO
    temp_dir = _TempDir()
    fname_temp = op.join(temp_dir, 'egi_test.fif')
    _check_roundtrip(dig_montage, fname_temp)

    # Test coordinate transform
    dig_montage.transform_to_head()
    # nasion
    assert_almost_equal(dig_montage.nasion[0], 0)
    assert_almost_equal(dig_montage.nasion[2], 0)
    # lpa and rpa
    assert_allclose(dig_montage.lpa[1:], 0, atol=1e-16)
    assert_allclose(dig_montage.rpa[1:], 0, atol=1e-16)

    # Test accuracy and embedding within raw object
    raw_egi = read_raw_egi(egi_raw_fname, channel_naming='EEG %03d')
    raw_egi.set_montage(dig_montage)
    test_raw_egi = read_raw_fif(egi_fif_fname)

    assert_equal(len(raw_egi.ch_names), len(test_raw_egi.ch_names))
    for ch_raw, ch_test_raw in zip(raw_egi.info['chs'],
                                   test_raw_egi.info['chs']):
        assert_equal(ch_raw['ch_name'], ch_test_raw['ch_name'])
        assert_equal(ch_raw['coord_frame'], FIFF.FIFFV_COORD_HEAD)
        assert_allclose(ch_raw['loc'], ch_test_raw['loc'], atol=1e-7)
    assert_dig_allclose(raw_egi.info, test_raw_egi.info)
开发者ID:Eric89GXL,项目名称:mne-python,代码行数:30,代码来源:test_montage.py


示例5: test_fif_dig_montage

def test_fif_dig_montage():
    """Test FIF dig montage support"""
    dig_montage = read_dig_montage(fif=fif_dig_montage_fname)

    # Make a BrainVision file like the one the user would have had
    with warnings.catch_warnings(record=True) as w:
        raw_bv = read_raw_brainvision(bv_fname, preload=True)
    assert_true(any('will be dropped' in str(ww.message) for ww in w))
    raw_bv_2 = raw_bv.copy()
    mapping = dict()
    for ii, ch_name in enumerate(raw_bv.ch_names[:-1]):
        mapping[ch_name] = 'EEG%03d' % (ii + 1,)
    raw_bv.rename_channels(mapping)
    for ii, ch_name in enumerate(raw_bv_2.ch_names[:-1]):
        mapping[ch_name] = 'EEG%03d' % (ii + 33,)
    raw_bv_2.rename_channels(mapping)
    raw_bv.drop_channels(['STI 014'])
    raw_bv.add_channels([raw_bv_2])

    # Set the montage
    raw_bv.set_montage(dig_montage)

    # Check the result
    evoked = read_evokeds(evoked_fname)[0]

    assert_equal(len(raw_bv.ch_names), len(evoked.ch_names))
    for ch_py, ch_c in zip(raw_bv.info['chs'], evoked.info['chs']):
        assert_equal(ch_py['ch_name'], ch_c['ch_name'].replace('EEG ', 'EEG'))
        # C actually says it's unknown, but it's not (?):
        # assert_equal(ch_py['coord_frame'], ch_c['coord_frame'])
        assert_equal(ch_py['coord_frame'], FIFF.FIFFV_COORD_HEAD)
        assert_allclose(ch_py['loc'], ch_c['loc'])
    assert_dig_allclose(raw_bv.info, evoked.info)
开发者ID:alexandrebarachant,项目名称:mne-python,代码行数:33,代码来源:test_montage.py


示例6: _check_roundtrip

def _check_roundtrip(montage, fname):
    """Check roundtrip writing."""
    assert_equal(montage.coord_frame, "head")
    montage.save(fname)
    montage_read = read_dig_montage(fif=fname)
    assert_equal(str(montage), str(montage_read))
    for kind in ("elp", "hsp", "nasion", "lpa", "rpa"):
        assert_allclose(getattr(montage, kind), getattr(montage_read, kind), err_msg=kind)
    assert_equal(montage_read.coord_frame, "head")
开发者ID:mne-tools,项目名称:mne-python,代码行数:9,代码来源:test_montage.py


示例7: _check_roundtrip

def _check_roundtrip(montage, fname):
    """Check roundtrip writing."""
    assert_equal(montage.coord_frame, 'head')
    montage.save(fname)
    montage_read = read_dig_montage(fif=fname)
    assert_equal(str(montage), str(montage_read))
    for kind in ('elp', 'hsp', 'nasion', 'lpa', 'rpa'):
        assert_allclose(getattr(montage, kind),
                        getattr(montage_read, kind), err_msg=kind)
    assert_equal(montage_read.coord_frame, 'head')
开发者ID:mvdoc,项目名称:mne-python,代码行数:10,代码来源:test_montage.py


示例8: test_read_dig_montage

def test_read_dig_montage():
    """Test read_dig_montage"""
    names = ['nasion', 'lpa', 'rpa', '1', '2', '3', '4', '5']
    montage = read_dig_montage(hsp, hpi, elp, names, transform=False)
    elp_points = _read_dig_points(elp)
    hsp_points = _read_dig_points(hsp)
    hpi_points = read_mrk(hpi)
    assert_equal(montage.point_names, names)
    assert_array_equal(montage.elp, elp_points)
    assert_array_equal(montage.hsp, hsp_points)
    assert_array_equal(montage.hpi, hpi_points)
    assert_true(montage.dev_head_t is None)
    montage = read_dig_montage(hsp, hpi, elp, names,
                               transform=True, dev_head_t=True)
    # check coordinate transformation
    # nasion
    assert_almost_equal(montage.nasion[0], 0)
    assert_almost_equal(montage.nasion[2], 0)
    # lpa and rpa
    assert_allclose(montage.lpa[1:], 0, atol=1e-16)
    assert_allclose(montage.rpa[1:], 0, atol=1e-16)
    # device head transform
    dev_head_t = fit_matched_points(tgt_pts=montage.elp,
                                    src_pts=montage.hpi, out='trans')
    assert_array_equal(montage.dev_head_t, dev_head_t)

    # Digitizer as array
    m2 = read_dig_montage(hsp_points, hpi_points, elp_points, names, unit='m')
    assert_array_equal(m2.hsp, montage.hsp)
    m3 = read_dig_montage(hsp_points * 1000, hpi_points, elp_points * 1000,
                          names)
    assert_allclose(m3.hsp, montage.hsp)

    # test unit parameter and .mat support
    tempdir = _TempDir()
    mat_hsp = op.join(tempdir, 'test.mat')
    savemat(mat_hsp, dict(Points=(1000 * hsp_points).T))
    montage_cm = read_dig_montage(mat_hsp, hpi, elp, names, unit='cm')
    assert_allclose(montage_cm.hsp, montage.hsp * 10.)
    assert_allclose(montage_cm.elp, montage.elp * 10.)
    assert_array_equal(montage_cm.hpi, montage.hpi)
    assert_raises(ValueError, read_dig_montage, hsp, hpi, elp, names,
                  unit='km')
开发者ID:mvdoc,项目名称:mne-python,代码行数:43,代码来源:test_montage.py


示例9: test_set_dig_montage

def test_set_dig_montage():
    """Test applying DigMontage to inst."""
    # Extensive testing of applying `dig` to info is done in test_meas_info
    # with `test_make_dig_points`.
    names = ['nasion', 'lpa', 'rpa', '1', '2', '3', '4', '5']
    hsp_points = _read_dig_points(hsp)
    elp_points = _read_dig_points(elp)
    nasion, lpa, rpa = elp_points[:3]
    nm_trans = get_ras_to_neuromag_trans(nasion, lpa, rpa)
    elp_points = apply_trans(nm_trans, elp_points)
    nasion, lpa, rpa = elp_points[:3]
    hsp_points = apply_trans(nm_trans, hsp_points)

    montage = read_dig_montage(hsp, hpi, elp, names, transform=True,
                               dev_head_t=True)
    temp_dir = _TempDir()
    fname_temp = op.join(temp_dir, 'test.fif')
    montage.save(fname_temp)
    montage_read = read_dig_montage(fif=fname_temp)
    for use_mon in (montage, montage_read):
        info = create_info(['Test Ch'], 1e3, ['eeg'])
        with pytest.warns(None):  # warns on one run about not all positions
            _set_montage(info, use_mon)
        hs = np.array([p['r'] for i, p in enumerate(info['dig'])
                       if p['kind'] == FIFF.FIFFV_POINT_EXTRA])
        nasion_dig = np.array([p['r'] for p in info['dig']
                               if all([p['ident'] == FIFF.FIFFV_POINT_NASION,
                                       p['kind'] == FIFF.FIFFV_POINT_CARDINAL])
                               ])
        lpa_dig = np.array([p['r'] for p in info['dig']
                            if all([p['ident'] == FIFF.FIFFV_POINT_LPA,
                                    p['kind'] == FIFF.FIFFV_POINT_CARDINAL])])
        rpa_dig = np.array([p['r'] for p in info['dig']
                            if all([p['ident'] == FIFF.FIFFV_POINT_RPA,
                                    p['kind'] == FIFF.FIFFV_POINT_CARDINAL])])
        hpi_dig = np.array([p['r'] for p in info['dig']
                            if p['kind'] == FIFF.FIFFV_POINT_HPI])
        assert_allclose(hs, hsp_points, atol=1e-7)
        assert_allclose(nasion_dig.ravel(), nasion, atol=1e-7)
        assert_allclose(lpa_dig.ravel(), lpa, atol=1e-7)
        assert_allclose(rpa_dig.ravel(), rpa, atol=1e-7)
        assert_allclose(hpi_dig, elp_points[3:], atol=1e-7)
开发者ID:Eric89GXL,项目名称:mne-python,代码行数:42,代码来源:test_montage.py


示例10: test_read_dig_montage

def test_read_dig_montage():
    """Test read_dig_montage"""
    names = ['nasion', 'lpa', 'rpa', '1', '2', '3', '4', '5']
    montage = read_dig_montage(hsp, hpi, elp, names, transform=False)
    elp_points = _read_dig_points(elp)
    hsp_points = _read_dig_points(hsp)
    hpi_points = read_mrk(hpi)
    assert_equal(montage.point_names, names)
    assert_array_equal(montage.elp, elp_points)
    assert_array_equal(montage.hsp, hsp_points)
    assert_array_equal(montage.hpi, hpi_points)
    assert_true(montage.dev_head_t is None)
    montage = read_dig_montage(hsp, hpi, elp, names,
                               transform=True, dev_head_t=True)
    # check coordinate transformation
    # nasion
    assert_almost_equal(montage.nasion[0], 0)
    assert_almost_equal(montage.nasion[2], 0)
    # lpa and rpa
    assert_allclose(montage.lpa[1:], 0, atol=1e-16)
    assert_allclose(montage.rpa[1:], 0, atol=1e-16)
    # device head transform
    dev_head_t = fit_matched_points(tgt_pts=montage.elp,
                                    src_pts=montage.hpi, out='trans')
    assert_array_equal(montage.dev_head_t, dev_head_t)

    # Digitizer as array
    m2 = read_dig_montage(hsp_points, hpi_points, elp_points, names, unit='m')
    assert_array_equal(m2.hsp, montage.hsp)
    m3 = read_dig_montage(hsp_points * 1000, hpi_points, elp_points * 1000,
                          names)
    assert_allclose(m3.hsp, montage.hsp)

    # test unit parameter and .mat support
    tempdir = _TempDir()
    mat_hsp = op.join(tempdir, 'test.mat')
    savemat(mat_hsp, dict(Points=(1000 * hsp_points).T))
    montage_cm = read_dig_montage(mat_hsp, hpi, elp, names, unit='cm')
    assert_allclose(montage_cm.hsp, montage.hsp * 10.)
    assert_allclose(montage_cm.elp, montage.elp * 10.)
    assert_array_equal(montage_cm.hpi, montage.hpi)
    assert_raises(ValueError, read_dig_montage, hsp, hpi, elp, names,
                  unit='km')
    # extra columns
    extra_hsp = op.join(tempdir, 'test.txt')
    with open(hsp, 'rb') as fin:
        with open(extra_hsp, 'wb') as fout:
            for line in fin:
                if line.startswith(b'%'):
                    fout.write(line)
                else:
                    # extra column
                    fout.write(line.rstrip() + b' 0.0 0.0 0.0\n')
    with warnings.catch_warnings(record=True) as w:
        montage_extra = read_dig_montage(extra_hsp, hpi, elp, names)
    assert_true(len(w) == 1 and all('columns' in str(ww.message) for ww in w))
    assert_allclose(montage_extra.hsp, montage.hsp)
    assert_allclose(montage_extra.elp, montage.elp)
开发者ID:claire-braboszcz,项目名称:mne-python,代码行数:58,代码来源:test_montage.py


示例11: test_make_info

def test_make_info():
    """Test some create_info properties
    """
    n_ch = 1
    info = create_info(n_ch, 1000., 'eeg')
    assert_equal(sorted(info.keys()), sorted(RAW_INFO_FIELDS))

    coil_types = set([ch['coil_type'] for ch in info['chs']])
    assert_true(FIFF.FIFFV_COIL_EEG in coil_types)

    assert_raises(TypeError, create_info, ch_names='Test Ch', sfreq=1000)
    assert_raises(ValueError, create_info, ch_names=['Test Ch'], sfreq=-1000)
    assert_raises(ValueError, create_info, ch_names=['Test Ch'], sfreq=1000,
                  ch_types=['eeg', 'eeg'])
    assert_raises(TypeError, create_info, ch_names=[np.array([1])],
                  sfreq=1000)
    assert_raises(TypeError, create_info, ch_names=['Test Ch'], sfreq=1000,
                  ch_types=np.array([1]))
    assert_raises(KeyError, create_info, ch_names=['Test Ch'], sfreq=1000,
                  ch_types='awesome')
    assert_raises(TypeError, create_info, ['Test Ch'], sfreq=1000,
                  ch_types=None, montage=np.array([1]))
    m = read_montage('biosemi32')
    info = create_info(ch_names=m.ch_names, sfreq=1000., ch_types='eeg',
                       montage=m)
    ch_pos = [ch['loc'][:3] for ch in info['chs']]
    assert_array_equal(ch_pos, m.pos)

    names = ['nasion', 'lpa', 'rpa', '1', '2', '3', '4', '5']
    d = read_dig_montage(hsp_fname, None, elp_fname, names, unit='m',
                         transform=False)
    info = create_info(ch_names=m.ch_names, sfreq=1000., ch_types='eeg',
                       montage=d)
    idents = [p['ident'] for p in info['dig']]
    assert_true(FIFF.FIFFV_POINT_NASION in idents)

    info = create_info(ch_names=m.ch_names, sfreq=1000., ch_types='eeg',
                       montage=[d, m])
    ch_pos = [ch['loc'][:3] for ch in info['chs']]
    assert_array_equal(ch_pos, m.pos)
    idents = [p['ident'] for p in info['dig']]
    assert_true(FIFF.FIFFV_POINT_NASION in idents)
    info = create_info(ch_names=m.ch_names, sfreq=1000., ch_types='eeg',
                       montage=[d, 'biosemi32'])
    ch_pos = [ch['loc'][:3] for ch in info['chs']]
    assert_array_equal(ch_pos, m.pos)
    idents = [p['ident'] for p in info['dig']]
    assert_true(FIFF.FIFFV_POINT_NASION in idents)
开发者ID:esdalmaijer,项目名称:mne-python,代码行数:48,代码来源:test_meas_info.py


示例12: test_set_dig_montage

def test_set_dig_montage():
    """Test applying DigMontage to inst

    Extensive testing of applying `dig` to info is done in test_meas_info
    with `test_make_dig_points`.
    """
    names = ['nasion', 'lpa', 'rpa', '1', '2', '3', '4', '5']
    hsp_points = _read_dig_points(hsp)
    elp_points = _read_dig_points(elp)
    hpi_points = read_mrk(hpi)
    p0, p1, p2 = elp_points[:3]
    nm_trans = get_ras_to_neuromag_trans(p0, p1, p2)
    elp_points = apply_trans(nm_trans, elp_points)
    nasion_point, lpa_point, rpa_point = elp_points[:3]
    hsp_points = apply_trans(nm_trans, hsp_points)

    montage = read_dig_montage(hsp, hpi, elp, names, unit='m', transform=True)
    info = create_info(['Test Ch'], 1e3, ['eeg'])
    _set_montage(info, montage)
    hs = np.array([p['r'] for i, p in enumerate(info['dig'])
                   if p['kind'] == FIFF.FIFFV_POINT_EXTRA])
    nasion_dig = np.array([p['r'] for p in info['dig']
                           if all([p['ident'] == FIFF.FIFFV_POINT_NASION,
                                   p['kind'] == FIFF.FIFFV_POINT_CARDINAL])])
    lpa_dig = np.array([p['r'] for p in info['dig']
                        if all([p['ident'] == FIFF.FIFFV_POINT_LPA,
                                p['kind'] == FIFF.FIFFV_POINT_CARDINAL])])
    rpa_dig = np.array([p['r'] for p in info['dig']
                        if all([p['ident'] == FIFF.FIFFV_POINT_RPA,
                                p['kind'] == FIFF.FIFFV_POINT_CARDINAL])])
    hpi_dig = np.array([p['r'] for p in info['dig']
                        if p['kind'] == FIFF.FIFFV_POINT_HPI])
    assert_array_equal(hs, hsp_points)
    assert_array_equal(nasion_dig.ravel(), nasion_point)
    assert_array_equal(lpa_dig.ravel(), lpa_point)
    assert_array_equal(rpa_dig.ravel(), rpa_point)
    assert_array_equal(hpi_dig, hpi_points)
    assert_array_equal(montage.dev_head_t, info['dev_head_t']['trans'])
开发者ID:Famguy,项目名称:mne-python,代码行数:38,代码来源:test_montage.py


示例13: test_make_info

def test_make_info():
    """Test some create_info properties."""
    n_ch = 1
    info = create_info(n_ch, 1000.0, "eeg")
    assert_equal(sorted(info.keys()), sorted(RAW_INFO_FIELDS))

    coil_types = set([ch["coil_type"] for ch in info["chs"]])
    assert_true(FIFF.FIFFV_COIL_EEG in coil_types)

    assert_raises(TypeError, create_info, ch_names="Test Ch", sfreq=1000)
    assert_raises(ValueError, create_info, ch_names=["Test Ch"], sfreq=-1000)
    assert_raises(ValueError, create_info, ch_names=["Test Ch"], sfreq=1000, ch_types=["eeg", "eeg"])
    assert_raises(TypeError, create_info, ch_names=[np.array([1])], sfreq=1000)
    assert_raises(TypeError, create_info, ch_names=["Test Ch"], sfreq=1000, ch_types=np.array([1]))
    assert_raises(KeyError, create_info, ch_names=["Test Ch"], sfreq=1000, ch_types="awesome")
    assert_raises(TypeError, create_info, ["Test Ch"], sfreq=1000, ch_types=None, montage=np.array([1]))
    m = read_montage("biosemi32")
    info = create_info(ch_names=m.ch_names, sfreq=1000.0, ch_types="eeg", montage=m)
    ch_pos = [ch["loc"][:3] for ch in info["chs"]]
    assert_array_equal(ch_pos, m.pos)

    names = ["nasion", "lpa", "rpa", "1", "2", "3", "4", "5"]
    d = read_dig_montage(hsp_fname, None, elp_fname, names, unit="m", transform=False)
    info = create_info(ch_names=m.ch_names, sfreq=1000.0, ch_types="eeg", montage=d)
    idents = [p["ident"] for p in info["dig"]]
    assert_true(FIFF.FIFFV_POINT_NASION in idents)

    info = create_info(ch_names=m.ch_names, sfreq=1000.0, ch_types="eeg", montage=[d, m])
    ch_pos = [ch["loc"][:3] for ch in info["chs"]]
    assert_array_equal(ch_pos, m.pos)
    idents = [p["ident"] for p in info["dig"]]
    assert_true(FIFF.FIFFV_POINT_NASION in idents)
    info = create_info(ch_names=m.ch_names, sfreq=1000.0, ch_types="eeg", montage=[d, "biosemi32"])
    ch_pos = [ch["loc"][:3] for ch in info["chs"]]
    assert_array_equal(ch_pos, m.pos)
    idents = [p["ident"] for p in info["dig"]]
    assert_true(FIFF.FIFFV_POINT_NASION in idents)
开发者ID:mne-tools,项目名称:mne-python,代码行数:37,代码来源:test_meas_info.py



注:本文中的mne.channels.montage.read_dig_montage函数示例由纯净天空整理自Github/MSDocs等源码及文档管理平台,相关代码片段筛选自各路编程大神贡献的开源项目,源码版权归原作者所有,传播和使用请参考对应项目的License;未经允许,请勿转载。


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