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Python base.Measure类代码示例

原作者: [db:作者] 来自: [db:来源] 收藏 邀请

本文整理汇总了Python中mvpa2.measures.base.Measure的典型用法代码示例。如果您正苦于以下问题:Python Measure类的具体用法?Python Measure怎么用?Python Measure使用的例子?那么恭喜您, 这里精选的类代码示例或许可以为您提供帮助。



在下文中一共展示了Measure类的14个代码示例,这些例子默认根据受欢迎程度排序。您可以为喜欢或者感觉有用的代码点赞,您的评价将有助于我们的系统推荐出更棒的Python代码示例。

示例1: __init__

    def __init__(self, axis, fx, other_axis_prefix=None, **kwargs):
        '''
        Parameters
        ----------
        axis: str or int
            'samples' (or 0) or 'features' (or 1).
        fx: callable
            function to determine the winner. When called with a dataset ds,
            it should return a vector with ds.nsamples values 
            (if axis=='features') or ds.nfeatures values (if axis=='samples').  
        other_axis_prefix: str
            prefix used for feature or sample attributes set on the other axis.
        '''
        Measure.__init__(self, **kwargs)
        if type(axis) is str:
            str2num = dict(samples=0, features=1)
            if not axis in str2num:
                raise ValueError("Illegal axis: should be %s" %
                                        ' or '.join(str2num))
            axis = str2num[axis]

        elif not axis in (0, 1):
            raise ValueError("Illegal axis: should be 0 or 1")

        self.__axis = axis
        self.__fx = fx
        self.__other_axis_prefix = other_axis_prefix
开发者ID:neurosbh,项目名称:PyMVPA,代码行数:27,代码来源:winner.py


示例2: __init__

    def __init__(self, queryengine, roi_ids=None, nproc=None, **kwargs):
        """
        Parameters
        ----------
        queryengine : QueryEngine
          Engine to use to discover the "neighborhood" of each feature.
          See :class:`~mvpa2.misc.neighborhood.QueryEngine`.
        roi_ids : None or list(int) or str
          List of feature ids (not coordinates) the shall serve as ROI seeds
          (e.g. sphere centers). Alternatively, this can be the name of a
          feature attribute of the input dataset, whose non-zero values
          determine the feature ids. By default all features will be used.
        nproc : None or int
          How many processes to use for computation.  Requires `pprocess`
          external module.  If None -- all available cores will be used.
        **kwargs
          In addition this class supports all keyword arguments of its
          base-class :class:`~mvpa2.measures.base.Measure`.
      """
        Measure.__init__(self, **kwargs)

        if nproc is not None and nproc > 1 and not externals.exists('pprocess'):
            raise RuntimeError("The 'pprocess' module is required for "
                               "multiprocess searchlights. Please either "
                               "install python-pprocess, or reduce `nproc` "
                               "to 1 (got nproc=%i)" % nproc)

        self._queryengine = queryengine
        if roi_ids is not None and not isinstance(roi_ids, str) \
                and not len(roi_ids):
            raise ValueError, \
                  "Cannot run searchlight on an empty list of roi_ids"
        self.__roi_ids = roi_ids
        self.nproc = nproc
开发者ID:otizonaizit,项目名称:PyMVPA,代码行数:34,代码来源:searchlight.py


示例3: __init__

    def __init__(self, pairwise_metric='correlation', center_data=False,
                    square=False, **kwargs):
        """Initialize

        Parameters
        ----------

        pairwise_metric :   String. Distance metric to use for calculating 
                            pairwise vector distances for dissimilarity matrix 
                            (DSM).  See scipy.spatial.distance.pdist for all 
                            possible metrics.  (Default ='correlation', i.e. one 
                            minus Pearson correlation) 
        center_data :       boolean. (Optional. Default = False) If True then center 
                            each column of the data matrix by subtracing the column 
                            mean from each element  (by chunk if chunks_attr 
                            specified). This is recommended especially when using 
                            pairwise_metric = 'correlation'.  
        square :            boolean. (Optional.  Default = False) If True return 
                            the square distance matrices, if False, returns the 
                            flattened lower triangle.
    
        Returns
        -------
        Dataset :           Contains a column vector of length = n(n-1)/2 of pairwise 
                            distances between all samples if square = False; square 
                            dissimilarty matrix if square = True.
        """

        Measure.__init__(self, **kwargs) 
        self.pairwise_metric = pairwise_metric
        self.center_data = center_data 
        self.square = square
开发者ID:rystoli,项目名称:RyMVPA,代码行数:32,代码来源:rsa.py


示例4: __init__

    def __init__(self, dsmatrix, dset_metric, output_metric="spearman"):
        Measure.__init__(self)

        self.dsmatrix = dsmatrix
        self.dset_metric = dset_metric
        self.output_metric = output_metric
        self.dset_dsm = []
开发者ID:kirtyvedula,项目名称:PyMVPA,代码行数:7,代码来源:ds.py


示例5: __init__

    def __init__(self, dset_metric, nsubjs, compare_ave, k, **kwargs):
        Measure.__init__(self,  **kwargs)

        self.dset_metric = dset_metric
        self.dset_dsm = []
        self.nsubjs = nsubjs
        self.compare_ave = compare_ave
        self.k = k
开发者ID:PepGardiola,项目名称:PyMVPA,代码行数:8,代码来源:rsm.py


示例6: __init__

    def __init__(self, **kwargs):
        """
        Returns
        -------
        Dataset
          If square is False, contains a column vector of length = n(n-1)/2 of
          pairwise distances between all samples. A sample attribute ``pairs``
          identifies the indices of input samples for each individual pair.
          If square is True, the dataset contains a square dissimilarty matrix
          and the entire sample attributes collection of the input dataset.
        """

        Measure.__init__(self, **kwargs)
开发者ID:Arthurkorn,项目名称:PyMVPA,代码行数:13,代码来源:rsa.py


示例7: __init__

    def __init__(self, target_dsm, partial_dsm = None, pairwise_metric='correlation', 
                    comparison_metric='pearson', center_data = False, 
                    corrcoef_only = False, **kwargs):
        """
        Initialize

        Parameters
        ----------
        dataset :           Dataset with N samples such that corresponding dissimilarity
                            matrix has N*(N-1)/2 unique pairwise distances
        target_dsm :        numpy array, length N*(N-1)/2. Target dissimilarity matrix
        partial_dsm:        numpy array, length N*(N-1)/2. DSM to be partialled out
                            Default: 'None'; assumes use of pcorr.py    
        pairwise_metric :   To be used by pdist to calculate dataset DSM
                            Default: 'correlation', 
                            see scipy.spatial.distance.pdist for other metric options.
        comparison_metric : To be used for comparing dataset dsm with target dsm
                            Default: 'pearson'. Options: 'pearson' or 'spearman'
        center_data :       Center data by subtracting mean column values from
                            columns prior to calculating dataset dsm. 
                            Default: False
        corrcoef_only :     If true, return only the correlation coefficient
                            (rho), otherwise return rho and probability, p. 
                            Default: False
        Returns
        -------
        Dataset :           Dataset contains the correlation coefficient (rho) only or
                            rho plus p, when corrcoef_only is set to false.
        """
        # init base classes first
        Measure.__init__(self, **kwargs)
        if comparison_metric not in ['spearman','pearson']:
            raise Exception("comparison_metric %s is not in "
                            "['spearman','pearson']" % comparison_metric)
        self.target_dsm = target_dsm
        if comparison_metric == 'spearman':
            self.target_dsm = rankdata(target_dsm)
        self.pairwise_metric = pairwise_metric
        self.comparison_metric = comparison_metric
        self.center_data = center_data
        self.corrcoef_only = corrcoef_only
        self.partial_dsm = partial_dsm
        if comparison_metric == 'spearman' and partial_dsm != None:
            self.partial_dsm = rankdata(partial_dsm)
开发者ID:zingbretsen,项目名称:RyMVPA,代码行数:44,代码来源:rsa.py


示例8: __init__

    def __init__(self, target_dsm, control_dsms = None, **kwargs):
        """
        Parameters
        ----------
        target_dsm : array (length N*(N-1)/2)
          Target dissimilarity matrix
        control_dsms : list of arrays (each length N*(N-1)/2)
          Dissimilarity matrices to control for in multiple regression; flexible number allowed
          *Optional. Returns r/rho coefficients for target_dsm, controlling for these dsms

        Returns
        -------
        Dataset
          If ``corrcoef_only`` is True, contains one feature: the correlation
          coefficient (rho); or otherwise two-fetaures: rho plus p.
        """
        # init base classes first
        Measure.__init__(self, **kwargs)
        self.target_dsm = target_dsm
        self.control_dsms = control_dsms
        if self.params.comparison_metric == 'spearman':
            self.target_dsm = rankdata(target_dsm)
            if control_dsms != None: self.control_dsms = [rankdata(dm) for dm in control_dsms]
开发者ID:rystoli,项目名称:PyMVPA,代码行数:23,代码来源:rsa.py


示例9: __init__

 def __init__(self):
     Measure.__init__(self, auto_train=True)
开发者ID:kirty,项目名称:PyMVPA,代码行数:2,代码来源:test_searchlight.py


示例10: __init__

 def __init__(self, **kwargs):
     Measure.__init__(self, **kwargs)
开发者ID:Arthurkorn,项目名称:PyMVPA,代码行数:2,代码来源:test_surfing.py


示例11: __init__

 def __init__(self, metric='pearson', space='targets', **kwargs):
     Measure.__init__(self, **kwargs)
     self.metric = metric
     self.space = space
开发者ID:andreirusu,项目名称:PyMVPA,代码行数:4,代码来源:rsm.py


示例12: __init__

 def __init__(self, **kwargs):
     Measure.__init__(self, **kwargs)
     self._train_ds = None
开发者ID:PyMVPA,项目名称:PyMVPA,代码行数:3,代码来源:rsa.py


示例13: __init__

 def __init__(self, model='regression', cthresh=0.10):
     Measure.__init__(self)
     self.cthresh = cthresh
     self.model = model
开发者ID:PepGardiola,项目名称:PyMVPA,代码行数:4,代码来源:ismooth.py


示例14: __init__

 def __init__(self, dtype, **kwargs):
     Measure.__init__(self, **kwargs)
     self.dtype = dtype
开发者ID:StevenLOL,项目名称:PyMVPA,代码行数:3,代码来源:test_surfing_afni.py



注:本文中的mvpa2.measures.base.Measure类示例由纯净天空整理自Github/MSDocs等源码及文档管理平台,相关代码片段筛选自各路编程大神贡献的开源项目,源码版权归原作者所有,传播和使用请参考对应项目的License;未经允许,请勿转载。


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