本文整理汇总了Python中pypet.trajectory.Trajectory类的典型用法代码示例。如果您正苦于以下问题：Python Trajectory类的具体用法？Python Trajectory怎么用？Python Trajectory使用的例子？那么恭喜您, 这里精选的类代码示例或许可以为您提供帮助。
在下文中一共展示了Trajectory类的20个代码示例，这些例子默认根据受欢迎程度排序。您可以为喜欢或者感觉有用的代码点赞，您的评价将有助于我们的系统推荐出更棒的Python代码示例。
示例1: setUp
def setUp(self):
logging.basicConfig(level = logging.INFO)
traj = Trajectory('Test')
traj.v_storage_service = LazyStorageService()
large_amount = 111
for irun in range(large_amount):
name = 'There.Are.Many.Parameters.Like.Me' + str(irun)
traj.f_add_parameter(name, irun)
traj.f_add_parameter('TestExplorer', 1)
traj.v_fast_access=False
traj.f_explore({traj.TestExplorer.v_full_name:[1,2,3,4,5]})
traj.v_fast_access=True
self.traj = traj
self.n = 1
self.single_run = self.traj._make_single_run(self.n)
self.assertTrue(len(self.single_run)==1)
开发者ID:lsolanka，项目名称:pypet，代码行数:25，代码来源:trajectory_test.py
示例2: load_trajectory
def load_trajectory(self,trajectory_index=None,trajectory_name=None,as_new=False):
### Load The Trajectory and check if the values are still the same
newtraj = Trajectory()
newtraj.v_storage_service=HDF5StorageService(filename=self.filename)
newtraj.f_load(name=trajectory_name, load_derived_parameters=2,load_results=2,
index=trajectory_index, as_new=as_new)
return newtraj
开发者ID:ilonajulczuk，项目名称:pypet，代码行数:7，代码来源:hdf5_storage_test.py
示例3: test_a_large_run
def test_a_large_run(self):
get_root_logger().info('Testing large run')
self.traj.f_add_parameter('TEST', 'test_run')
###Explore
self.explore_large(self.traj)
self.make_run_large_data()
self.assertTrue(self.traj.f_is_completed())
# Check if printing and repr work
get_root_logger().info(str(self.env))
get_root_logger().info(repr(self.env))
newtraj = Trajectory()
newtraj.f_load(name=self.traj.v_name, as_new=False, load_data=2, filename=self.filename)
self.traj.f_load_skeleton()
self.traj.f_load_items(self.traj.f_to_dict().keys(), only_empties=True)
self.compare_trajectories(self.traj,newtraj)
size=os.path.getsize(self.filename)
size_in_mb = size/1000000.
get_root_logger().info('Size is %sMB' % str(size_in_mb))
self.assertTrue(size_in_mb < 30.0, 'Size is %sMB > 30MB' % str(size_in_mb))
开发者ID:MehmetTimur，项目名称:pypet，代码行数:25，代码来源:environment_test.py
示例4: test_partially_delete_stuff
def test_partially_delete_stuff(self):
traj = Trajectory(name='TestDelete',
filename=make_temp_file('testpartiallydel.hdf5'))
res = traj.f_add_result('mytest.test', a='b', c='d')
traj.f_store()
self.assertTrue('a' in res)
traj.f_delete_item(res, delete_only=['a'], remove_from_item=True)
self.assertTrue('c' in res)
self.assertTrue('a' not in res)
res['a'] = 'offf'
self.assertTrue('a' in res)
traj.f_load(load_results=3)
self.assertTrue('a' not in res)
self.assertTrue('c' in res)
traj.f_delete_item(res, remove_from_trajectory=True, remove_empty_groups=True)
self.assertTrue('results' not in traj)
self.assertTrue(res not in traj)
开发者ID:ilonajulczuk，项目名称:pypet，代码行数:27，代码来源:hdf5_storage_test.py
示例5: test_store_and_load_large_dictionary
def test_store_and_load_large_dictionary(self):
traj = Trajectory(name='Test', filename=make_temp_file('large_dict.hdf5'))
large_dict = {}
for irun in range(1025):
large_dict['item_%d' % irun] = irun
large_dict2 = {}
for irun in range(33):
large_dict2['item_%d' % irun] = irun
traj.f_add_result('large_dict', large_dict, comment='Huge_dict!')
traj.f_add_result('large_dict2', large_dict2, comment='Not so large dict!')
traj.f_store()
traj_name = traj.v_name
traj2 = Trajectory(filename=make_temp_file('large_dict.hdf5'))
traj2.f_load(name=traj_name, load_all=2)
self.compare_trajectories(traj, traj2)
开发者ID:lsolanka，项目名称:pypet，代码行数:25，代码来源:hdf5_storage_test.py
示例6: test_root_getting
def test_root_getting(self):
traj = Trajectory()
traj.f_add_config_group('ff')
root = traj.ff.f_get_root()
self.assertTrue(root is traj)
开发者ID:lsolanka，项目名称:pypet，代码行数:9，代码来源:trajectory_test.py
示例7: test_storage_service_errors
def test_storage_service_errors(self):
traj = Trajectory(filename=make_temp_file('testnoservice.hdf5'))
traj_name = traj.v_name
# you cannot store stuff before the trajectory was stored once:
with self.assertRaises(ValueError):
traj.v_storage_service.store('FAKESERVICE', self, trajectory_name = traj.v_name)
traj.f_store()
with self.assertRaises(ValueError):
traj.v_storage_service.store('FAKESERVICE', self, trajectory_name = 'test')
with self.assertRaises(pex.NoSuchServiceError):
traj.v_storage_service.store('FAKESERVICE', self, trajectory_name = traj.v_name)
with self.assertRaises(ValueError):
traj.f_load(name = 'test', index=1)
with self.assertRaises(RuntimeError):
traj.v_storage_service.store('LIST', [('LEAF',None,None,None,None)], trajectory_name = traj.v_name)
with self.assertRaises(ValueError):
traj.f_load(index=9999)
with self.assertRaises(ValueError):
traj.f_load(name='Non-Existising-Traj')
开发者ID:ilonajulczuk，项目名称:pypet，代码行数:30，代码来源:hdf5_storage_test.py
示例8: test_net
def test_net(self):
self.env.f_run(run_net)
self.traj.f_load(load_derived_parameters=2, load_results=2)
traj2 = Trajectory(name = self.traj.v_name, add_time=False,
filename=make_temp_file('experiments/tests/briantests/HDF5/briantest.hdf5'),
dynamically_imported_classes=['pypet.brian.parameter.BrianParameter',
BrianMonitorResult])
traj2.f_load(load_parameters=2, load_derived_parameters=2, load_results=2)
self.compare_trajectories(self.traj, traj2)
开发者ID:ilonajulczuk，项目名称:pypet，代码行数:13，代码来源:brian_full_network_test.py
示例9: test_run
def test_run(self):
self.env.f_run(dostuff_and_add_links)
self.traj.f_load(load_data=2)
traj2 = Trajectory()
traj2.f_load(name=self.traj.v_name, filename=self.filename)
traj2.f_load(load_data=2)
for run in self.traj.f_get_run_names():
self.assertTrue(self.traj.res.runs[run].paraBL is self.traj.paramB)
self.compare_trajectories(self.traj, traj2)
开发者ID:SmokinCaterpillar，项目名称:pypet，代码行数:15，代码来源:link_test.py
示例10: test_not_adding_pars_during_single_run
def test_not_adding_pars_during_single_run(self):
traj = Trajectory()
traj._is_run = True
with self.assertRaises(TypeError):
traj.f_add_parameter('dd')
with self.assertRaises(TypeError):
traj.f_add_parameter_group('dd')
with self.assertRaises(TypeError):
traj.f_add_config('dd')
with self.assertRaises(TypeError):
traj.f_add_config_group('dd')
开发者ID:lsolanka，项目名称:pypet，代码行数:16，代码来源:trajectory_test.py
示例11: test_illegal_namings
def test_illegal_namings(self):
self.traj=Trajectory('resulttest2')
with self.assertRaises(ValueError):
self.traj.f_add_parameter('f_get')
with self.assertRaises(ValueError):
self.traj.f_add_result('test.$.k.$')
rg=self.traj.f_add_result_group('ggg.$')
with self.assertRaises(ValueError):
rg.f_add_result('$.fff')
self.traj.f_add_result_group('test.$.k')
with self.assertRaises(ValueError):
self.traj.res.k.f_add_result('$.jjj')
with self.assertRaises(ValueError):
self.traj.f_add_parameter('e'*129)
with self.assertRaises(ValueError):
self.traj.f_add_parameter('e'*120+'.j'*120+'.k'*40)
with self.assertRaises(ValueError):
self.traj.f_add_parameter('crun',22)
开发者ID:lsolanka，项目名称:pypet，代码行数:26，代码来源:trajectory_test.py
示例12: test_short_cuts
def test_short_cuts(self):
self.traj = Trajectory()
self.traj.f_add_parameter('test', 42)
self.traj.f_add_config('tefffst', 42)
self.traj.f_add_derived_parameter('dtest', 42)
self.traj.f_add_result('safd', 42)
self.traj.f_explore({'test':[1,2,3,4]})
self.assertEqual(id(self.traj.par), id(self.traj.parameters))
#self.assertEqual(id(self.traj.param), id(self.traj.parameters))
self.assertEqual(id(self.traj.dpar), id(self.traj.derived_parameters))
#self.assertEqual(id(self.traj.dparam), id(self.traj.derived_parameters))
self.assertEqual(id(self.traj.conf), id(self.traj.config))
self.assertEqual(id(self.traj.res), id(self.traj.results))
srun = self.traj._make_single_run(3)
srun.f_add_result('sdffds',42)
self.assertEqual(id(srun.results.crun), id(srun.results.f_get(srun.v_name)))
开发者ID:lsolanka，项目名称:pypet，代码行数:32，代码来源:trajectory_test.py
示例13: test_loading
def test_loading(filenames, traj_names):
loading_times = np.zeros(len(traj_names))
loading_times_wd = np.zeros(len(traj_names))
n_groups= np.zeros(len(traj_names), dtype='int')
for idx, traj_name in enumerate(traj_names):
filename = filenames[idx]
traj = Trajectory(name=traj_name, filename=filename, add_time=False)
start = time.time()
traj.f_load(load_parameters=2, load_results=1, load_derived_parameters=1)
elapsed = (time.time() - start)
loading_times[idx]=elapsed
n_groups[idx] = len([x for x in traj.f_iter_nodes(recursive=True)])
del traj
traj = Trajectory(name=traj_name, filename=filename, add_time=False)
start = time.time()
traj.f_load(load_all=2)
elapsed = (time.time() - start)
loading_times_wd[idx]=elapsed
for idx, loading_time in enumerate(loading_times):
loading_time_wd = loading_times_wd[idx]
groups = n_groups[idx]
print('Groups: %d, Loading: %.3fs, with Data: %.3fs' % (groups, loading_time, loading_time_wd))
开发者ID:lsolanka，项目名称:pypet，代码行数:28，代码来源:speed_test.py
示例14: test_net
def test_net(self):
self.env.f_run(run_net)
self.traj.f_load(load_derived_parameters=2, load_results=2)
traj2 = Trajectory(name = self.traj.v_name, add_time=False,
filename=make_temp_dir(os.path.join(
'experiments',
'tests',
'briantests',
'HDF5',
'briantest.hdf5')),
dynamic_imports=['pypet.brian.parameter.BrianParameter',
BrianMonitorResult])
traj2.f_load(load_parameters=2, load_derived_parameters=2, load_results=2)
self.compare_trajectories(self.traj, traj2)
开发者ID:MehmetTimur，项目名称:pypet，代码行数:18，代码来源:brian_full_network_test.py
示例15: test_attribute_error_raises_when_leaf_and_group_with_same_name_are_added
def test_attribute_error_raises_when_leaf_and_group_with_same_name_are_added(self):
self.traj = Trajectory()
self.traj.f_add_parameter('test.param1')
with self.assertRaises(AttributeError):
self.traj.f_add_parameter('test.param1.param2')
with self.assertRaises(AttributeError):
self.traj.f_add_parameter('test')
开发者ID:lsolanka，项目名称:pypet，代码行数:11，代码来源:trajectory_test.py
示例16: test_remov_of_explored_stuff_if_not_saved
def test_remov_of_explored_stuff_if_not_saved(self):
self.traj = Trajectory()
self.traj.f_add_parameter('test', 42)
self.traj.f_explore({'test':[1,2,3,4]})
self.traj.parameters.f_remove_child('test')
self.assertTrue(len(self.traj) == 1)
开发者ID:lsolanka，项目名称:pypet，代码行数:11，代码来源:trajectory_test.py
示例17: test_storage_and_loading
def test_storage_and_loading(self):
self.traj.f_store()
traj_name = self.traj.v_name
del self.traj
self.traj = Trajectory(filename=self.filename)
self.traj.f_load(name=traj_name, load_results=2, load_parameters=2, load_derived_parameters=2,
load_other_data=2)
self.test_annotations_insert()
开发者ID:ilonajulczuk，项目名称:pypet，代码行数:13，代码来源:annotations_test.py
示例18: test_pipeline
def test_pipeline(self):
filename = 'testpostprocpipe.hdf5'
env1, filename, _, _ = self.make_environment(filename, 'k1')
env2 = self.make_environment(filename, 'k2', log=False)[0]
traj1 = env1.v_trajectory
traj2 = env2.v_trajectory
trajs = [traj1, traj2]
traj2.f_add_parameter('x', 1, comment='1st')
traj2.f_add_parameter('y', 1, comment='1st')
exp_dict2 = {'x':[1, 2, 3, 4, 1, 2, 2, 3],
'y':[1, 2, 3, 4, 1, 2, 0, 1]}
traj2.f_explore(exp_dict2)
res1 = env1.f_pipeline(pipeline=mypipeline)
self.are_results_in_order(res1)
res2 = env2.f_run(Multiply(), 22)
self.are_results_in_order(res2)
traj_name = traj1.v_name
traj1 = Trajectory(traj_name, add_time=False, filename=filename)
traj1.f_load(load_data=2)
traj2.f_load(load_data=2)
self.compare_trajectories(traj1, traj2)
env1.f_disable_logging()
env2.f_disable_logging()
开发者ID:MehmetTimur，项目名称:pypet，代码行数:39，代码来源:pipeline_test.py
示例19: test_remove_of_explored_stuff_if_saved
def test_remove_of_explored_stuff_if_saved(self):
self.traj = Trajectory()
self.traj.f_add_parameter('test', 42)
self.traj.f_explore({'test':[1,2,3,4]})
self.traj._stored=True
self.traj.parameters.f_remove_child('test')
len(self.traj) == 4
开发者ID:lsolanka，项目名称:pypet，代码行数:13，代码来源:trajectory_test.py
示例20: profile_single_storing
def profile_single_storing(profile_stroing=False, profile_loading=True):
logging.basicConfig(level = logging.INFO)
logfolder = os.path.join(tempfile.gettempdir(), TEMPDIR, 'logs')
pathfolder = os.path.join(tempfile.gettempdir(), TEMPDIR, 'hdf5')
res_per_run = 100
env = Environment(log_folder=logfolder, filename=pathfolder,
ncores=2, multiproc=False,
use_pool=True,
wrap_mode='QUEUE')
traj = env.v_trajectory
traj.f_add_parameter('res_per_run', res_per_run)
traj.f_add_parameter('trial', 0)
traj.f_explore({'trial':list(range(10))})
runexp = lambda : env.f_run(add_data)
if profile_stroing:
cProfile.runctx('runexp()', {'runexp': runexp},globals(), sort=1,
filename='store_stats.profile')
else:
runexp()
print('########################################################################')
traj = Trajectory(name=traj.v_name, add_time=False, filename= traj.v_storage_service.filename)
load = lambda : traj.f_load(load_parameters=2, load_results=1)
if profile_loading:
cProfile.runctx('load()', {'load': load},globals(), filename='load_stats.profile', sort=1)
开发者ID:lsolanka，项目名称:pypet，代码行数:38，代码来源:speed_test.py
注：本文中的pypet.trajectory.Trajectory类示例由纯净天空整理自Github/MSDocs等源码及文档管理平台，相关代码片段筛选自各路编程大神贡献的开源项目，源码版权归原作者所有，传播和使用请参考对应项目的License；未经允许，请勿转载。 |
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