本文整理汇总了Python中scipy._lib._util._asarray_validated函数的典型用法代码示例。如果您正苦于以下问题:Python _asarray_validated函数的具体用法?Python _asarray_validated怎么用?Python _asarray_validated使用的例子?那么恭喜您, 这里精选的函数代码示例或许可以为您提供帮助。
在下文中一共展示了_asarray_validated函数的20个代码示例,这些例子默认根据受欢迎程度排序。您可以为喜欢或者感觉有用的代码点赞,您的评价将有助于我们的系统推荐出更棒的Python代码示例。
示例1: py_vq2
def py_vq2(obs, code_book, check_finite=True):
"""2nd Python version of vq algorithm.
The algorithm simply computes the euclidian distance between each
observation and every frame in the code_book/
Parameters
----------
obs : ndarray
Expect a rank 2 array. Each row is one observation.
code_book : ndarray
Code book to use. Same format than obs. Should have same number of
features (eg columns) than obs.
check_finite : bool, optional
Whether to check that the input matrices contain only finite numbers.
Disabling may give a performance gain, but may result in problems
(crashes, non-termination) if the inputs do contain infinities or NaNs.
Default: True
Returns
-------
code : ndarray
code[i] gives the label of the ith obversation, that its code is
code_book[code[i]].
mind_dist : ndarray
min_dist[i] gives the distance between the ith observation and its
corresponding code.
Notes
-----
This could be faster when number of codebooks is small, but it
becomes a real memory hog when codebook is large. It requires
N by M by O storage where N=number of obs, M = number of
features, and O = number of codes.
"""
obs = _asarray_validated(obs, check_finite=check_finite)
code_book = _asarray_validated(code_book, check_finite=check_finite)
d = shape(obs)[1]
# code books and observations should have same number of features
if not d == code_book.shape[1]:
raise ValueError(
"""
code book(%d) and obs(%d) should have the same
number of features (eg columns)"""
% (code_book.shape[1], d)
)
diff = obs[newaxis, :, :] - code_book[:, newaxis, :]
dist = sqrt(np.sum(diff * diff, -1))
code = argmin(dist, 0)
min_dist = minimum.reduce(dist, 0)
# The next line I think is equivalent and should be faster than the one
# above, but in practice didn't seem to make much difference:
# min_dist = choose(code,dist)
return code, min_dist
开发者ID:cranticumar,项目名称:CameraITSonWindows,代码行数:57,代码来源:vq.py
示例2: py_vq
def py_vq(obs, code_book, check_finite=True):
""" Python version of vq algorithm.
The algorithm computes the euclidian distance between each
observation and every frame in the code_book.
Parameters
----------
obs : ndarray
Expects a rank 2 array. Each row is one observation.
code_book : ndarray
Code book to use. Same format than obs. Should have same number of
features (eg columns) than obs.
check_finite : bool, optional
Whether to check that the input matrices contain only finite numbers.
Disabling may give a performance gain, but may result in problems
(crashes, non-termination) if the inputs do contain infinities or NaNs.
Default: True
Returns
-------
code : ndarray
code[i] gives the label of the ith obversation, that its code is
code_book[code[i]].
mind_dist : ndarray
min_dist[i] gives the distance between the ith observation and its
corresponding code.
Notes
-----
This function is slower than the C version but works for
all input types. If the inputs have the wrong types for the
C versions of the function, this one is called as a last resort.
It is about 20 times slower than the C version.
"""
obs = _asarray_validated(obs, check_finite=check_finite)
code_book = _asarray_validated(code_book, check_finite=check_finite)
if obs.ndim != code_book.ndim:
raise ValueError("Observation and code_book should have the same rank")
if obs.ndim == 1:
obs = obs[:, np.newaxis]
code_book = code_book[:, np.newaxis]
dist = cdist(obs, code_book)
code = dist.argmin(axis=1)
min_dist = dist[np.arange(len(code)), code]
return code, min_dist
开发者ID:BranYang,项目名称:scipy,代码行数:51,代码来源:vq.py
示例3: __init__
def __init__(self, x, y, axis=0, extrapolate=None):
x = _asarray_validated(x, check_finite=False, as_inexact=True)
y = _asarray_validated(y, check_finite=False, as_inexact=True)
axis = axis % y.ndim
xp = x.reshape((x.shape[0],) + (1,)*(y.ndim-1))
yp = np.rollaxis(y, axis)
dk = self._find_derivatives(xp, yp)
data = np.hstack((yp[:, None, ...], dk[:, None, ...]))
_b = BPoly.from_derivatives(x, data, orders=None)
super(PchipInterpolator, self).__init__(_b.c, _b.x,
extrapolate=extrapolate)
self.axis = axis
开发者ID:BiosPsucheZoe,项目名称:scipy,代码行数:16,代码来源:_cubic.py
示例4: whiten
def whiten(obs, check_finite=True):
"""
Normalize a group of observations on a per feature basis.
Before running k-means, it is beneficial to rescale each feature
dimension of the observation set with whitening. Each feature is
divided by its standard deviation across all observations to give
it unit variance.
Parameters
----------
obs : ndarray
Each row of the array is an observation. The
columns are the features seen during each observation.
>>> # f0 f1 f2
>>> obs = [[ 1., 1., 1.], #o0
... [ 2., 2., 2.], #o1
... [ 3., 3., 3.], #o2
... [ 4., 4., 4.]] #o3
check_finite : bool, optional
Whether to check that the input matrices contain only finite numbers.
Disabling may give a performance gain, but may result in problems
(crashes, non-termination) if the inputs do contain infinities or NaNs.
Default: True
Returns
-------
result : ndarray
Contains the values in `obs` scaled by the standard deviation
of each column.
Examples
--------
>>> from scipy.cluster.vq import whiten
>>> features = np.array([[1.9, 2.3, 1.7],
... [1.5, 2.5, 2.2],
... [0.8, 0.6, 1.7,]])
>>> whiten(features)
array([[ 4.17944278, 2.69811351, 7.21248917],
[ 3.29956009, 2.93273208, 9.33380951],
[ 1.75976538, 0.7038557 , 7.21248917]])
"""
obs = _asarray_validated(obs, check_finite=check_finite)
std_dev = std(obs, axis=0)
zero_std_mask = std_dev == 0
if zero_std_mask.any():
std_dev[zero_std_mask] = 1.0
warnings.warn("Some columns have standard deviation zero. "
"The values of these columns will not change.",
RuntimeWarning)
return obs / std_dev
开发者ID:gwang-cv,项目名称:scipy,代码行数:54,代码来源:vq.py
示例5: fixed_point
def fixed_point(func, x0, args=(), xtol=1e-8, maxiter=500, method='del2'):
"""
Find a fixed point of the function.
Given a function of one or more variables and a starting point, find a
fixed-point of the function: i.e. where ``func(x0) == x0``.
Parameters
----------
func : function
Function to evaluate.
x0 : array_like
Fixed point of function.
args : tuple, optional
Extra arguments to `func`.
xtol : float, optional
Convergence tolerance, defaults to 1e-08.
maxiter : int, optional
Maximum number of iterations, defaults to 500.
method : {"del2", "iteration"}, optional
Method of finding the fixed-point, defaults to "del2"
which uses Steffensen's Method with Aitken's ``Del^2``
convergence acceleration [1]_. The "iteration" method simply iterates
the function until convergence is detected, without attempting to
accelerate the convergence.
References
----------
.. [1] Burden, Faires, "Numerical Analysis", 5th edition, pg. 80
Examples
--------
>>> from scipy import optimize
>>> def func(x, c1, c2):
... return np.sqrt(c1/(x+c2))
>>> c1 = np.array([10,12.])
>>> c2 = np.array([3, 5.])
>>> optimize.fixed_point(func, [1.2, 1.3], args=(c1,c2))
array([ 1.4920333 , 1.37228132])
"""
use_accel = {'del2': True, 'iteration': False}[method]
x0 = _asarray_validated(x0, as_inexact=True)
return _fixed_point_helper(func, x0, args, xtol, maxiter, use_accel)
开发者ID:Inoryy,项目名称:scipy,代码行数:44,代码来源:minpack.py
示例6: eig
def eig(a, b=None, left=False, right=True, overwrite_a=False,
overwrite_b=False, check_finite=True, homogeneous_eigvals=False):
"""
Solve an ordinary or generalized eigenvalue problem of a square matrix.
Find eigenvalues w and right or left eigenvectors of a general matrix::
a vr[:,i] = w[i] b vr[:,i]
a.H vl[:,i] = w[i].conj() b.H vl[:,i]
where ``.H`` is the Hermitian conjugation.
Parameters
----------
a : (M, M) array_like
A complex or real matrix whose eigenvalues and eigenvectors
will be computed.
b : (M, M) array_like, optional
Right-hand side matrix in a generalized eigenvalue problem.
Default is None, identity matrix is assumed.
left : bool, optional
Whether to calculate and return left eigenvectors. Default is False.
right : bool, optional
Whether to calculate and return right eigenvectors. Default is True.
overwrite_a : bool, optional
Whether to overwrite `a`; may improve performance. Default is False.
overwrite_b : bool, optional
Whether to overwrite `b`; may improve performance. Default is False.
check_finite : bool, optional
Whether to check that the input matrices contain only finite numbers.
Disabling may give a performance gain, but may result in problems
(crashes, non-termination) if the inputs do contain infinities or NaNs.
homogeneous_eigvals : bool, optional
If True, return the eigenvalues in homogeneous coordinates.
In this case ``w`` is a (2, M) array so that::
w[1,i] a vr[:,i] = w[0,i] b vr[:,i]
Default is False.
Returns
-------
w : (M,) or (2, M) double or complex ndarray
The eigenvalues, each repeated according to its
multiplicity. The shape is (M,) unless
``homogeneous_eigvals=True``.
vl : (M, M) double or complex ndarray
The normalized left eigenvector corresponding to the eigenvalue
``w[i]`` is the column vl[:,i]. Only returned if ``left=True``.
vr : (M, M) double or complex ndarray
The normalized right eigenvector corresponding to the eigenvalue
``w[i]`` is the column ``vr[:,i]``. Only returned if ``right=True``.
Raises
------
LinAlgError
If eigenvalue computation does not converge.
See Also
--------
eigvals : eigenvalues of general arrays
eigh : Eigenvalues and right eigenvectors for symmetric/Hermitian arrays.
eig_banded : eigenvalues and right eigenvectors for symmetric/Hermitian
band matrices
eigh_tridiagonal : eigenvalues and right eiegenvectors for
symmetric/Hermitian tridiagonal matrices
Examples
--------
>>> from scipy import linalg
>>> a = np.array([[0., -1.], [1., 0.]])
>>> linalg.eigvals(a)
array([0.+1.j, 0.-1.j])
>>> b = np.array([[0., 1.], [1., 1.]])
>>> linalg.eigvals(a, b)
array([ 1.+0.j, -1.+0.j])
>>> a = np.array([[3., 0., 0.], [0., 8., 0.], [0., 0., 7.]])
>>> linalg.eigvals(a, homogeneous_eigvals=True)
array([[3.+0.j, 8.+0.j, 7.+0.j],
[1.+0.j, 1.+0.j, 1.+0.j]])
"""
a1 = _asarray_validated(a, check_finite=check_finite)
if len(a1.shape) != 2 or a1.shape[0] != a1.shape[1]:
raise ValueError('expected square matrix')
overwrite_a = overwrite_a or (_datacopied(a1, a))
if b is not None:
b1 = _asarray_validated(b, check_finite=check_finite)
overwrite_b = overwrite_b or _datacopied(b1, b)
if len(b1.shape) != 2 or b1.shape[0] != b1.shape[1]:
raise ValueError('expected square matrix')
if b1.shape != a1.shape:
raise ValueError('a and b must have the same shape')
return _geneig(a1, b1, left, right, overwrite_a, overwrite_b,
homogeneous_eigvals)
geev, geev_lwork = get_lapack_funcs(('geev', 'geev_lwork'), (a1,))
compute_vl, compute_vr = left, right
#.........这里部分代码省略.........
开发者ID:charris,项目名称:scipy,代码行数:101,代码来源:decomp.py
示例7: hessenberg
def hessenberg(a, calc_q=False, overwrite_a=False, check_finite=True):
"""
Compute Hessenberg form of a matrix.
The Hessenberg decomposition is::
A = Q H Q^H
where `Q` is unitary/orthogonal and `H` has only zero elements below
the first sub-diagonal.
Parameters
----------
a : (M, M) array_like
Matrix to bring into Hessenberg form.
calc_q : bool, optional
Whether to compute the transformation matrix. Default is False.
overwrite_a : bool, optional
Whether to overwrite `a`; may improve performance.
Default is False.
check_finite : bool, optional
Whether to check that the input matrix contains only finite numbers.
Disabling may give a performance gain, but may result in problems
(crashes, non-termination) if the inputs do contain infinities or NaNs.
Returns
-------
H : (M, M) ndarray
Hessenberg form of `a`.
Q : (M, M) ndarray
Unitary/orthogonal similarity transformation matrix ``A = Q H Q^H``.
Only returned if ``calc_q=True``.
"""
a1 = _asarray_validated(a, check_finite=check_finite)
if len(a1.shape) != 2 or (a1.shape[0] != a1.shape[1]):
raise ValueError("expected square matrix")
overwrite_a = overwrite_a or (_datacopied(a1, a))
# if 2x2 or smaller: already in Hessenberg
if a1.shape[0] <= 2:
if calc_q:
return a1, numpy.eye(a1.shape[0])
return a1
gehrd, gebal, gehrd_lwork = get_lapack_funcs(("gehrd", "gebal", "gehrd_lwork"), (a1,))
ba, lo, hi, pivscale, info = gebal(a1, permute=0, overwrite_a=overwrite_a)
if info < 0:
raise ValueError("illegal value in %d-th argument of internal gebal " "(hessenberg)" % -info)
n = len(a1)
lwork = _compute_lwork(gehrd_lwork, ba.shape[0], lo=lo, hi=hi)
hq, tau, info = gehrd(ba, lo=lo, hi=hi, lwork=lwork, overwrite_a=1)
if info < 0:
raise ValueError("illegal value in %d-th argument of internal gehrd " "(hessenberg)" % -info)
h = numpy.triu(hq, -1)
if not calc_q:
return h
# use orghr/unghr to compute q
orghr, orghr_lwork = get_lapack_funcs(("orghr", "orghr_lwork"), (a1,))
lwork = _compute_lwork(orghr_lwork, n, lo=lo, hi=hi)
q, info = orghr(a=hq, tau=tau, lo=lo, hi=hi, lwork=lwork, overwrite_a=1)
if info < 0:
raise ValueError("illegal value in %d-th argument of internal orghr " "(hessenberg)" % -info)
return h, q
开发者ID:metamorph-inc,项目名称:meta-core,代码行数:68,代码来源:decomp.py
示例8: kmeans
def kmeans(obs, k_or_guess, iter=20, thresh=1e-5, check_finite=True):
"""
Performs k-means on a set of observation vectors forming k clusters.
The k-means algorithm adjusts the centroids until sufficient
progress cannot be made, i.e. the change in distortion since
the last iteration is less than some threshold. This yields
a code book mapping centroids to codes and vice versa.
Distortion is defined as the sum of the squared differences
between the observations and the corresponding centroid.
Parameters
----------
obs : ndarray
Each row of the M by N array is an observation vector. The
columns are the features seen during each observation.
The features must be whitened first with the `whiten` function.
k_or_guess : int or ndarray
The number of centroids to generate. A code is assigned to
each centroid, which is also the row index of the centroid
in the code_book matrix generated.
The initial k centroids are chosen by randomly selecting
observations from the observation matrix. Alternatively,
passing a k by N array specifies the initial k centroids.
iter : int, optional
The number of times to run k-means, returning the codebook
with the lowest distortion. This argument is ignored if
initial centroids are specified with an array for the
``k_or_guess`` parameter. This parameter does not represent the
number of iterations of the k-means algorithm.
thresh : float, optional
Terminates the k-means algorithm if the change in
distortion since the last k-means iteration is less than
or equal to thresh.
check_finite : bool, optional
Whether to check that the input matrices contain only finite numbers.
Disabling may give a performance gain, but may result in problems
(crashes, non-termination) if the inputs do contain infinities or NaNs.
Default: True
Returns
-------
codebook : ndarray
A k by N array of k centroids. The i'th centroid
codebook[i] is represented with the code i. The centroids
and codes generated represent the lowest distortion seen,
not necessarily the globally minimal distortion.
distortion : float
The distortion between the observations passed and the
centroids generated.
See Also
--------
kmeans2 : a different implementation of k-means clustering
with more methods for generating initial centroids but without
using a distortion change threshold as a stopping criterion.
whiten : must be called prior to passing an observation matrix
to kmeans.
Examples
--------
>>> from numpy import array
>>> from scipy.cluster.vq import vq, kmeans, whiten
>>> features = array([[ 1.9,2.3],
... [ 1.5,2.5],
... [ 0.8,0.6],
... [ 0.4,1.8],
... [ 0.1,0.1],
... [ 0.2,1.8],
... [ 2.0,0.5],
... [ 0.3,1.5],
... [ 1.0,1.0]])
>>> whitened = whiten(features)
>>> book = array((whitened[0],whitened[2]))
>>> kmeans(whitened,book)
(array([[ 2.3110306 , 2.86287398], # random
[ 0.93218041, 1.24398691]]), 0.85684700941625547)
>>> from numpy import random
>>> random.seed((1000,2000))
>>> codes = 3
>>> kmeans(whitened,codes)
(array([[ 2.3110306 , 2.86287398], # random
[ 1.32544402, 0.65607529],
[ 0.40782893, 2.02786907]]), 0.5196582527686241)
"""
obs = _asarray_validated(obs, check_finite=check_finite)
if int(iter) < 1:
raise ValueError('iter must be at least 1.')
# Determine whether a count (scalar) or an initial guess (array) was passed.
#.........这里部分代码省略.........
开发者ID:gwang-cv,项目名称:scipy,代码行数:101,代码来源:vq.py
示例9: kmeans2
def kmeans2(data, k, iter=10, thresh=1e-5, minit='random',
missing='warn', check_finite=True):
"""
Classify a set of observations into k clusters using the k-means algorithm.
The algorithm attempts to minimize the Euclidian distance between
observations and centroids. Several initialization methods are
included.
Parameters
----------
data : ndarray
A 'M' by 'N' array of 'M' observations in 'N' dimensions or a length
'M' array of 'M' one-dimensional observations.
k : int or ndarray
The number of clusters to form as well as the number of
centroids to generate. If `minit` initialization string is
'matrix', or if a ndarray is given instead, it is
interpreted as initial cluster to use instead.
iter : int, optional
Number of iterations of the k-means algrithm to run. Note
that this differs in meaning from the iters parameter to
the kmeans function.
thresh : float, optional
(not used yet)
minit : str, optional
Method for initialization. Available methods are 'random',
'points', 'uniform', and 'matrix':
'random': generate k centroids from a Gaussian with mean and
variance estimated from the data.
'points': choose k observations (rows) at random from data for
the initial centroids.
'uniform': generate k observations from the data from a uniform
distribution defined by the data set (unsupported).
'matrix': interpret the k parameter as a k by M (or length k
array for one-dimensional data) array of initial centroids.
missing : str, optional
Method to deal with empty clusters. Available methods are
'warn' and 'raise':
'warn': give a warning and continue.
'raise': raise an ClusterError and terminate the algorithm.
check_finite : bool, optional
Whether to check that the input matrices contain only finite numbers.
Disabling may give a performance gain, but may result in problems
(crashes, non-termination) if the inputs do contain infinities or NaNs.
Default: True
Returns
-------
centroid : ndarray
A 'k' by 'N' array of centroids found at the last iteration of
k-means.
label : ndarray
label[i] is the code or index of the centroid the
i'th observation is closest to.
"""
data = _asarray_validated(data, check_finite=check_finite)
if missing not in _valid_miss_meth:
raise ValueError("Unkown missing method: %s" % str(missing))
# If data is rank 1, then we have 1 dimension problem.
nd = np.ndim(data)
if nd == 1:
d = 1
# raise ValueError("Input of rank 1 not supported yet")
elif nd == 2:
d = data.shape[1]
else:
raise ValueError("Input of rank > 2 not supported")
if np.size(data) < 1:
raise ValueError("Input has 0 items.")
# If k is not a single value, then it should be compatible with data's
# shape
if np.size(k) > 1 or minit == 'matrix':
if not nd == np.ndim(k):
raise ValueError("k is not an int and has not same rank than data")
if d == 1:
nc = len(k)
else:
(nc, dc) = k.shape
if not dc == d:
raise ValueError("k is not an int and has not same rank than\
data")
clusters = k.copy()
else:
try:
nc = int(k)
except TypeError:
raise ValueError("k (%s) could not be converted to an integer " % str(k))
if nc < 1:
raise ValueError("kmeans2 for 0 clusters ? (k was %s)" % str(k))
#.........这里部分代码省略.........
开发者ID:gwang-cv,项目名称:scipy,代码行数:101,代码来源:vq.py
示例10: vq
def vq(obs, code_book, check_finite=True):
"""
Assign codes from a code book to observations.
Assigns a code from a code book to each observation. Each
observation vector in the 'M' by 'N' `obs` array is compared with the
centroids in the code book and assigned the code of the closest
centroid.
The features in `obs` should have unit variance, which can be
achieved by passing them through the whiten function. The code
book can be created with the k-means algorithm or a different
encoding algorithm.
Parameters
----------
obs : ndarray
Each row of the 'M' x 'N' array is an observation. The columns are
the "features" seen during each observation. The features must be
whitened first using the whiten function or something equivalent.
code_book : ndarray
The code book is usually generated using the k-means algorithm.
Each row of the array holds a different code, and the columns are
the features of the code.
>>> # f0 f1 f2 f3
>>> code_book = [
... [ 1., 2., 3., 4.], #c0
... [ 1., 2., 3., 4.], #c1
... [ 1., 2., 3., 4.]] #c2
check_finite : bool, optional
Whether to check that the input matrices contain only finite numbers.
Disabling may give a performance gain, but may result in problems
(crashes, non-termination) if the inputs do contain infinities or NaNs.
Default: True
Returns
-------
code : ndarray
A length M array holding the code book index for each observation.
dist : ndarray
The distortion (distance) between the observation and its nearest
code.
Examples
--------
>>> from numpy import array
>>> from scipy.cluster.vq import vq
>>> code_book = array([[1.,1.,1.],
... [2.,2.,2.]])
>>> features = array([[ 1.9,2.3,1.7],
... [ 1.5,2.5,2.2],
... [ 0.8,0.6,1.7]])
>>> vq(features,code_book)
(array([1, 1, 0],'i'), array([ 0.43588989, 0.73484692, 0.83066239]))
"""
obs = _asarray_validated(obs, check_finite=check_finite)
code_book = _asarray_validated(code_book, check_finite=check_finite)
ct = common_type(obs, code_book)
c_obs = obs.astype(ct, copy=False)
if code_book.dtype != ct:
c_code_book = code_book.astype(ct)
else:
c_code_book = code_book
if ct in (single, double):
results = _vq.vq(c_obs, c_code_book)
else:
results = py_vq(obs, code_book)
return results
开发者ID:gwang-cv,项目名称:scipy,代码行数:74,代码来源:vq.py
示例11: py_vq
def py_vq(obs, code_book, check_finite=True):
""" Python version of vq algorithm.
The algorithm computes the euclidian distance between each
observation and every frame in the code_book.
Parameters
----------
obs : ndarray
Expects a rank 2 array. Each row is one observation.
code_book : ndarray
Code book to use. Same format than obs. Should have same number of
features (eg columns) than obs.
check_finite : bool, optional
Whether to check that the input matrices contain only finite numbers.
Disabling may give a performance gain, but may result in problems
(crashes, non-termination) if the inputs do contain infinities or NaNs.
Default: True
Returns
-------
code : ndarray
code[i] gives the label of the ith obversation, that its code is
code_book[code[i]].
mind_dist : ndarray
min_dist[i] gives the distance between the ith observation and its
corresponding code.
Notes
-----
This function is slower than the C version but works for
all input types. If the inputs have the wrong types for the
C versions of the function, this one is called as a last resort.
It is about 20 times slower than the C version.
"""
obs = _asarray_validated(obs, check_finite=check_finite)
code_book = _asarray_validated(code_book, check_finite=check_finite)
# n = number of observations
# d = number of features
if np.ndim(obs) == 1:
if not np.ndim(obs) == np.ndim(code_book):
raise ValueError(
"Observation and code_book should have the same rank")
else:
return _py_vq_1d(obs, code_book)
else:
(n, d) = shape(obs)
# code books and observations should have same number of features and same
# shape
if not np.ndim(obs) == np.ndim(code_book):
raise ValueError("Observation and code_book should have the same rank")
elif not d == code_book.shape[1]:
raise ValueError("Code book(%d) and obs(%d) should have the same "
"number of features (eg columns)""" %
(code_book.shape[1], d))
code = zeros(n, dtype=int)
min_dist = zeros(n)
for i in range(n):
dist = np.sum((obs[i] - code_book) ** 2, 1)
code[i] = argmin(dist)
min_dist[i] = dist[code[i]]
return code, sqrt(min_dist)
开发者ID:gwang-cv,项目名称:scipy,代码行数:68,代码来源:vq.py
示例12: _prepare_x
def _prepare_x(self, x):
"""Reshape input x array to 1-D"""
x = _asarray_validated(x, check_finite=False, as_inexact=True)
x_shape = x.shape
return x.ravel(), x_shape
开发者ID:dyao-vu,项目名称:meta-core,代码行数:5,代码来源:polyint.py
示例13: sqrtm
def sqrtm(A, disp=True, blocksize=64):
"""
Matrix square root.
Parameters
----------
A : (N, N) array_like
Matrix whose square root to evaluate
disp : bool, optional
Print warning if error in the result is estimated large
instead of returning estimated error. (Default: True)
blocksize : integer, optional
If the blocksize is not degenerate with respect to the
size of the input array, then use a blocked algorithm. (Default: 64)
Returns
-------
sqrtm : (N, N) ndarray
Value of the sqrt function at `A`
errest : float
(if disp == False)
Frobenius norm of the estimated error, ||err||_F / ||A||_F
References
----------
.. [1] Edvin Deadman, Nicholas J. Higham, Rui Ralha (2013)
"Blocked Schur Algorithms for Computing the Matrix Square Root,
Lecture Notes in Computer Science, 7782. pp. 171-182.
Examples
--------
>>> from scipy.linalg import sqrtm
>>> a = np.array([[1.0, 3.0], [1.0, 4.0]])
>>> r = sqrtm(a)
>>> r
array([[ 0.75592895, 1.13389342],
[ 0.37796447, 1.88982237]])
>>> r.dot(r)
array([[ 1., 3.],
[ 1., 4.]])
"""
A = _asarray_validated(A, check_finite=True, as_inexact=True)
if len(A.shape) != 2:
raise ValueError("Non-matrix input to matrix function.")
if blocksize < 1:
raise ValueError("The blocksize should be at least 1.")
keep_it_real = np.isrealobj(A)
if keep_it_real:
T, Z = schur(A)
if not np.array_equal(T, np.triu(T)):
T, Z = rsf2csf(T, Z)
else:
T, Z = schur(A, output='complex')
failflag = False
try:
R = _sqrtm_triu(T, blocksize=blocksize)
ZH = np.conjugate(Z).T
X = Z.dot(R).dot(ZH)
except SqrtmError:
failflag = True
X = np.empty_like(A)
X.fill(np.nan)
if disp:
nzeig = np.any(np.diag(T) == 0)
if nzeig:
print("Matrix is singular and may not have a square root.")
elif failflag:
print("Failed to find a square root.")
return X
else:
try:
arg2 = norm(X.dot(X) - A, 'fro')**2 / norm(A, 'fro')
except ValueError:
# NaNs in matrix
arg2 = np.inf
return X, arg2
开发者ID:1641731459,项目名称:scipy,代码行数:81,代码来源:_matfuncs_sqrtm.py
示例14: hessenberg
def hessenberg(a, calc_q=False, overwrite_a=False, check_finite=True):
"""
Compute Hessenberg form of a matrix.
The Hessenberg decomposition is::
A = Q H Q^H
where `Q` is unitary/orthogonal and `H` has only zero elements below
the first sub-diagonal.
Parameters
----------
a : (M, M) array_like
Matrix to bring into Hessenberg form.
calc_q : bool, optional
Whether to compute the transformation matrix. Default is False.
overwrite_a : bool, optional
Whether to overwrite `a`; may improve performance.
Default is False.
check_finite : bool, optional
Whether to check that the input matrix contains only finite numbers.
Disabling may give a performance gain, but may result in problems
(crashes, non-termination) if the inputs do contain infinities or NaNs.
Returns
-------
H : (M, M) ndarray
Hessenberg form of `a`.
Q : (M, M) ndarray
Unitary/orthogonal similarity transformation matrix ``A = Q H Q^H``.
Only returned if ``calc_q=True``.
Examples
--------
>>> from scipy.linalg import hessenberg
>>> A = np.array([[2, 5, 8, 7], [5, 2, 2, 8], [7, 5, 6, 6], [5, 4, 4, 8]])
>>> H, Q = hessenberg(A, calc_q=True)
>>> H
array([[ 2. , -11.65843866, 1.42005301, 0.25349066],
[ -9.94987437, 14.53535354, -5.31022304, 2.43081618],
[ 0. , -1.83299243, 0.38969961, -0.51527034],
[ 0. , 0. , -3.83189513, 1.07494686]])
>>> np.allclose(Q @ H @ Q.conj().T - A, np.zeros((4, 4)))
True
"""
a1 = _asarray_validated(a, check_finite=check_finite)
if len(a1.shape) != 2 or (a1.shape[0] != a1.shape[1]):
raise ValueError('expected square matrix')
overwrite_a = overwrite_a or (_datacopied(a1, a))
# if 2x2 or smaller: already in Hessenberg
if a1.shape[0] <= 2:
if calc_q:
return a1, numpy.eye(a1.shape[0])
return a1
gehrd, gebal, gehrd_lwork = get_lapack_funcs(('gehrd', 'gebal',
'gehrd_lwork'), (a1,))
ba, lo, hi, pivscale, info = gebal(a1, permute=0, overwrite_a=overwrite_a)
_check_info(info, 'gebal (hessenberg)', positive=False)
n = len(a1)
lwork = _compute_lwork(gehrd_lwork, ba.shape[0], lo=lo, hi=hi)
hq, tau, info = gehrd(ba, lo=lo, hi=hi, lwork=lwork, overwrite_a=1)
_check_info(info, 'gehrd (hessenberg)', positive=False)
h = numpy.triu(hq, -1)
if not calc_q:
return h
# use orghr/unghr to compute q
orghr, orghr_lwork = get_lapack_funcs(('orghr', 'orghr_lwork'), (a1,))
lwork = _compute_lwork(orghr_lwork, n, lo=lo, hi=hi)
q, info = orghr(a=hq, tau=tau, lo=lo, hi=hi, lwork=lwork, overwrite_a=1)
_check_info(info, 'orghr (hessenberg)', positive=False)
return h, q
开发者ID:charris,项目名称:scipy,代码行数:78,代码来源:decomp.py
示例15: eigh_tridiagonal
def eigh_tridiagonal(d, e, eigvals_only=False, select='a', select_range=None,
check_finite=True, tol=0., lapack_driver='auto'):
"""
Solve eigenvalue problem for a real symmetric tridiagonal matrix.
Find eigenvalues `w` and optionally right eigenvectors `v` of ``a``::
a v[:,i] = w[i] v[:,i]
v.H v = identity
For a real symmetric matrix ``a`` with diagonal elements `d` and
off-diagonal elements `e`.
Parameters
----------
d : ndarray, shape (ndim,)
The diagonal elements of the array.
e : ndarray, shape (ndim-1,)
The off-diagonal elements of the array.
select : {'a', 'v', 'i'}, optional
Which eigenvalues to calculate
====== ========================================
select calculated
====== ========================================
'a' All eigenvalues
'v' Eigenvalues in the interval (min, max]
'i' Eigenvalues with indices min <= i <= max
====== ========================================
select_range : (min, max), optional
Range of selected eigenvalues
check_finite : bool, optional
Whether to check that the input matrix contains only finite numbers.
Disabling may give a performance gain, but may result in problems
(crashes, non-termination) if the inputs do contain infinities or NaNs.
tol : float
The absolute tolerance to which each eigenvalue is required
(only used when 'stebz' is the `lapack_driver`).
An eigenvalue (or cluster) is considered to have converged if it
lies in an interval of this width. If <= 0. (default),
the value ``eps*|a|`` is used where eps is the machine precision,
and ``|a|`` is the 1-norm of the matrix ``a``.
lapack_driver : str
LAPACK function to use, can be 'auto', 'stemr', 'stebz', 'sterf',
or 'stev'. When 'auto' (default), it will use 'stemr' if ``select='a'``
and 'stebz' otherwise. When 'stebz' is used to find the eigenvalues and
``eigvals_only=False``, then a second LAPACK call (to ``?STEIN``) is
used to find the corresponding eigenvectors. 'sterf' can only be
used when ``eigvals_only=True`` and ``select='a'``. 'stev' can only
be used when ``select='a'``.
Returns
-------
w : (M,) ndarray
The eigenvalues, in ascending order, each repeated according to its
multiplicity.
v : (M, M) ndarray
The normalized eigenvector corresponding to the eigenvalue ``w[i]`` is
the column ``v[:,i]``.
Raises
------
LinAlgError
If eigenvalue computation does not converge.
See Also
--------
eigvalsh_tridiagonal : eigenvalues of symmetric/Hermitian tridiagonal
matrices
eig : eigenvalues and right eigenvectors for non-symmetric arrays
eigh : eigenvalues and right eigenvectors for symmetric/Hermitian arrays
eig_banded : eigenvalues and right eigenvectors for symmetric/Hermitian
band matrices
Notes
-----
This function makes use of LAPACK ``S/DSTEMR`` routines.
Examples
--------
>>> from scipy.linalg import eigh_tridiagonal
>>> d = 3*np.ones(4)
>>> e = -1*np.ones(3)
>>> w, v = eigh_tridiagonal(d, e)
>>> A = np.diag(d) + np.diag(e, k=1) + np.diag(e, k=-1)
>>> np.allclose(A @ v - v @ np.diag(w), np.zeros((4, 4)))
True
"""
d = _asarray_validated(d, check_finite=check_finite)
e = _asarray_validated(e, check_finite=check_finite)
for check in (d, e):
if check.ndim != 1:
raise ValueError('expected one-dimensional array')
if check.dtype.char in 'GFD': # complex
raise TypeError('Only real arrays currently supported')
if d.size != e.size + 1:
raise ValueError('d (%s) must have one more element than e (%s)'
% (d.size, e.size))
select, vl, vu, il, iu, _ = _check_select(
select, select_range, 0, d.size)
#.........这里部分代码省略.........
开发者ID:charris,项目名称:scipy,代码行数:101,代码来源:decomp.py
示例16: eig_banded
def eig_banded(
a_band,
lower=False,
eigvals_only=False,
overwrite_a_band=False,
select="a",
select_range=None,
max_ev=0,
check_finite=True,
):
"""
Solve real symmetric or complex hermitian band matrix eigenvalue problem.
Find eigenvalues w and optionally right eigenvectors v of a::
a v[:,i] = w[i] v[:,i]
v.H v = identity
The matrix a is stored in a_band either in lower diagonal or upper
diagonal ordered form:
a_band[u + i - j, j] == a[i,j] (if upper form; i <= j)
a_band[ i - j, j] == a[i,j] (if lower form; i >= j)
where u is the number of bands above the diagonal.
Example of a_band (shape of a is (6,6), u=2)::
upper form:
* * a02 a13 a24 a35
* a01 a12 a23 a34 a45
a00 a11 a22 a33 a44 a55
lower form:
a00 a11 a22 a33 a44 a55
a10 a21 a32 a43 a54 *
a20 a31 a42 a53 * *
Cells marked with * are not used.
Parameters
----------
a_band : (u+1, M) array_like
The bands of the M by M matrix a.
lower : bool, optional
Is the matrix in the lower form. (Default is upper form)
eigvals_only : bool, optional
Compute only the eigenvalues and no eigenvectors.
(Default: calculate also eigenvectors)
overwrite_a_band : bool, optional
Discard data in a_band (may enhance performance)
select : {'a', 'v', 'i'}, optional
Which eigenvalues to calculate
====== ========================================
select calculated
====== ========================================
'a' All eigenvalues
'v' Eigenvalues in the interval (min, max]
'i' Eigenvalues with indices min <= i <= max
====== ========================================
select_range : (min, max), optional
Range of selected eigenvalues
max_ev : int, optional
For select=='v', maximum number of eigenvalues expected.
For other values of select, has no meaning.
In doubt, leave this parameter untouched.
check_finite : bool, optional
Whether to check that the input matrix contains only finite numbers.
Disabling may give a performance gain, but may result in problems
(crashes, non-termination) if the inputs do contain infinities or NaNs.
Returns
-------
w : (M,) ndarray
The eigenvalues, in ascending order, each repeated according to its
multiplicity.
v : (M, M) float or complex ndarray
The normalized eigenvector corresponding to the eigenvalue w[i] is
the column v[:,i].
Raises LinAlgError if eigenvalue computation does not converge
"""
if eigvals_only or overwrite_a_band:
a1 = _asarray_validated(a_band, check_finite=check_finite)
overwrite_a_band = overwrite_a_band or (_datacopied(a1, a_band))
else:
a1 = array(a_band)
if issubclass(a1.dtype.type, inexact) and not isfinite(a1).all():
raise ValueError("array must not contain infs or NaNs")
overwrite_a_band = 1
if len(a1.shape) != 2:
raise ValueError("expected two-dimensional array")
if select.lower() not in [0, 1, 2, "a", "v", "i", "all", "value", "index"]:
raise ValueError("invalid argument for select")
if select.lower() in [0, "a", "all"]:
#.........这里部分代码省略.........
开发者ID:metamorph-inc,项目名称:meta-core,代码行数:101,代码来源:decomp.py
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