function index()
 {
     $url = $this->url;
     $webpage = $this->webpage->create($url);
     $tutor = $webpage->get_tutor();
     $annotation = new Annotation(1017);
     $user = $annotation->get_user();
     $unread_count = $user->get_unread_notification_count();
     $this->unit->run($unread_count, 'is_int', '先看一下user的未讀通知有幾封');
     $tutor->setup_recommend($annotation);
     $recommend = $annotation->get_recommend();
     $this->unit->run($recommend->get_id(), 'is_int', '有取得建議');
     $recommend_annotation = $recommend->get_recommend_by();
     $this->unit->run($recommend_annotation, NULL, '沒有推薦標註');
     $tips = $recommend->get_tips_text_array();
     $this->unit->run_false(count($tips), 0, '有建議');
     //------------------------------------------------
     $recommend_annotation = new Annotation(783);
     $recommend_annotation->set_score(0, 3);
     $recommend_annotation->update();
     $scope = new Annotation_scope(129);
     $recommend_scope = new Annotation_scope_collection();
     $recommend_scope->add_scope($scope);
     $annotation->set_recommend_scopes($recommend_scope);
     $tutor->setup_recommend($annotation);
     $recommend->reload();
     $recommend_annotation = $recommend->get_recommend_by();
     $this->unit->run($recommend_annotation->get_id(), 783, '有找到推薦標註');
     $this->unit->run($user->get_unread_notification_count(TRUE), $unread_count + 2, '因為新增了兩次推薦，所以應該有兩封通知？');
     //        $this->unit->run($test_result
     //                , $expected_result
     //                , $test_name);
     //context_complete();
     unit_test_report($this, __METHOD__);
 }

 /**
  * @test
  */
 public function throwsReflectionExceptionForMethodCallsWithoutGetOrIsOnSpecialValue()
 {
     expect(function () {
         $annotation = new Annotation('Example', 'someFunction()', ['__value' => 'true']);
         $annotation->invalid();
     })->throws(\ReflectionException::class)->withMessage('The value with name "invalid" for annotation @Example at someFunction() does not exist');
 }

 /**
  * Generates the actual interfaces
  */
 public function generate()
 {
     $interfacesData = json_decode($this->json, true);
     foreach ($interfacesData as $interface) {
         $filename = $interface['name'] . '.java';
         $interfaceObject = new JAVAInterfaceObject();
         $interfaceObject->setName($interface['name']);
         foreach ($interface['methods'] as $method) {
             $methodObject = new JAVAMethod();
             $methodObject->setName($method['name']);
             $methodObject->setReturnValue($method['returnType']);
             $methodObject->setScope($method['scope']);
             $methodObject->setComment($method['comment']);
             foreach ($method['parameters'] as $parameter) {
                 $parameterObject = new Parameter();
                 $parameterObject->setName($parameter['name']);
                 $parameterObject->setType($parameter['type']);
                 $methodObject->addParameter($parameterObject);
             }
             foreach ($method['annotations'] as $annotation) {
                 $annotationObject = new Annotation();
                 $annotationObject->setName($annotation['name']);
                 $annotationObject->setValue($annotation['value']);
                 $annotationObject->setInterpreter('@');
                 $methodObject->addAnnotation($annotationObject);
             }
             $interfaceObject->addMethod($methodObject);
         }
         file_put_contents($this->folder . DIRECTORY_SEPARATOR . $filename, $interfaceObject->toString());
     }
 }

 public function parse($text)
 {
     $ret = new Collection();
     if (preg_match_all('/@([^@\\n\\r\\t]*)/', $text, $globalMatches) > 0) {
         foreach ($globalMatches[1] as $annotationText) {
             preg_match('/([a-zA-Z0-9]+)/', $annotationText, $localMatches);
             if (in_array($localMatches[1], self::$ignoredAnnotations)) {
                 continue;
             }
             $annotation = new Annotation($localMatches[1]);
             $optsStart = strpos($annotationText, '(');
             if ($optsStart !== false) {
                 $optsEnd = strrpos($annotationText, ')');
                 $optsLength = $optsEnd - $optsStart - 1;
                 $opts = trim(substr($annotationText, $optsStart + 1, $optsLength));
                 foreach ($this->_parseOptions($opts) as $key => $values) {
                     foreach ($values as $value) {
                         $annotation->addOption($key, $value);
                     }
                 }
             }
             $ret->add($annotation);
         }
     }
     return $ret;
 }

 protected function get_feature(Annotation $annotation)
 {
     //if ($annotation->get_id() == 2363)
     //    test_msg('Language_variable_consensus', array($annotation->get_id(), $annotation->get_consensus_count()));
     $feature = $annotation->get_consensus_count();
     return $feature;
 }

 /**
  * @param Annotation $annotation
  */
 protected function annotationDeleted(Annotation $annotation)
 {
     $children = $annotation->getChildren();
     foreach ($children as $child) {
         $child->setStatus($annotation->getStatus());
         $child->save();
     }
 }

function annotations_from_hits($uri, $page, $hits)
{
    $EXTEND_BY = 3;
    $annotations = array();
    foreach ($hits as $hit) {
        print_r($hit);
        // what word does hit start in?
        $starting_word = $page->characters[$hit->start];
        // offset with respect to the starting word
        $starting_position = $hit->start - $page->word_start[$starting_word] - 1;
        // what word does hit end in?
        $ending_word = $page->characters[$hit->end];
        // offset  with respect to the ending word
        $ending_position = $hit->end - $page->word_start[$ending_word];
        echo $starting_word . ' ' . $starting_position . "\n";
        echo $ending_word . ' ' . $ending_position . "\n";
        $prefix_words = array();
        if ($starting_word > 0) {
            $prefix_pos = max(0, $starting_word - $EXTEND_BY);
            $prefix_count = $starting_word - $prefix_pos;
            $prefix_words = array_slice($page->words, $prefix_pos, $prefix_count);
            $prefix = substr($page->words[$starting_word], 0, $starting_position);
            if ($prefix != '') {
                $prefix_words[] = $prefix;
            }
        }
        $num_words = count($page->words);
        $suffix_words = array();
        if ($ending_word < $num_words - 1) {
            $suffix_pos = min($ending_word + $EXTEND_BY, $num_words);
            $suffix_count = $suffix_pos - $ending_word;
            $suffix_words = array_slice($page->words, $ending_word + 1, $suffix_count);
            $suffix = substr($page->words[$ending_word], $ending_position);
            if ($suffix != '') {
                array_unshift($suffix_words, $suffix);
            }
        }
        $a = new Annotation($uri);
        $a->add_permissions("acct:[email protected]");
        $a->add_text_quote(str_replace(" ", "\n", $hit->mid), join("\n", $prefix_words), join("\n", $suffix_words));
        // Not sure that we need this, and doesn't seme to be working
        /*
        $a->add_range(
        	"//div[@id='" . ($starting_word + 1) . "']",
        	$starting_position,
        	"//div[@id='" . ($ending_word + 1) . "']",
        	$ending_position
        	);
        */
        $a->add_tag($hit->type);
        if (isset($hit->text)) {
            $a->set_text($hit->text);
        }
        $annotations[] = $a;
    }
    return $annotations;
}

 public static function process(Annotation $a)
 {
     $classes = $a->getValues();
     foreach ($classes as $class) {
         $classFile = "../{$class}.class.php";
         if (file_exists($classFile)) {
             include_once $classFile;
         } else {
             throw new Exception("{$classFile} DO NOT EXIST");
         }
     }
 }

function punish_comments($hours = 6)
{
    global $globals, $db;
    $log = new Annotation('punish-comment');
    if ($log->read() && $log->time > time() - 3600 * $hours) {
        echo "Comments already verified at: " . get_date_time($log->time) . "\n";
        return false;
    }
    if ($globals['min_karma_for_comments'] > 0) {
        $min_karma = $globals['min_karma_for_comments'];
    } else {
        $min_karma = 4.5;
    }
    $votes_from = time() - $hours * 3600;
    // 'date_sub(now(), interval 6 hour)';
    $comments_from = time() - 2 * $hours * 3600;
    //'date_sub(now(), interval 12 hour)';
    echo "Starting karma_comments...\n";
    $users = "SELECT SQL_NO_CACHE distinct comment_user_id as user_id from comments, users where comment_date > from_unixtime({$comments_from}) and comment_karma < -50 and comment_user_id = user_id and user_level != 'disabled' and user_karma >= {$min_karma}";
    $result = $db->get_results($users);
    $log->store();
    if (!$result) {
        return;
    }
    foreach ($result as $dbuser) {
        $user = new User();
        $user->id = $dbuser->user_id;
        $user->read();
        printf("%07d  %s\n", $user->id, $user->username);
        $punish = 0;
        $comment_votes_count = (int) $db->get_var("SELECT SQL_NO_CACHE count(*) from votes, comments where comment_user_id = {$user->id} and comment_date > from_unixtime({$comments_from}) and vote_type='comments' and vote_link_id = comment_id and  vote_date > from_unixtime({$votes_from}) and vote_user_id != {$user->id}");
        if ($comment_votes_count > 5) {
            $votes_karma = (int) $db->get_var("SELECT SQL_NO_CACHE sum(vote_value) from votes, comments where comment_user_id = {$user->id} and comment_date > from_unixtime({$comments_from}) and vote_type='comments' and vote_link_id = comment_id and vote_date > from_unixtime({$votes_from}) and vote_user_id != {$user->id}");
            if ($votes_karma < 50) {
                $distinct_votes_count = (int) $db->get_var("SELECT SQL_NO_CACHE count(distinct comment_id) from votes, comments where comment_user_id = {$user->id} and comment_date > from_unixtime({$comments_from}) and vote_type='comments' and vote_link_id = comment_id and  vote_date > from_unixtime({$votes_from}) and vote_user_id != {$user->id}");
                $comments_count = (int) $db->get_var("SELECT SQL_NO_CACHE count(*) from comments where comment_user_id = {$user->id} and comment_date > from_unixtime({$comments_from})");
                $comment_coeff = min($comments_count / 10, 1) * min($distinct_votes_count / ($comments_count * 0.75), 1);
                $punish = max(-2, round($votes_karma * $comment_coeff * 1 / 1000, 2));
            }
        }
        if ($punish < -0.1) {
            echo "comments: {$comments_count} votes distinct: {$distinct_votes_count} karma: {$votes_karma} coef: {$comment_coeff} -> {$punish}\n";
            $user->karma += $punish;
            //$user->store();
            $annotation = new Annotation("karma-{$user->id}");
            //$annotation->append(_('Penalización por comentarios').": $punish, nuevo karma: $user->karma\n");
            echo _('Penalización por comentarios') . ": {$punish}, nuevo karma: {$user->karma}\n";
            $log->append(_('Penalización') . " {$user->username}: {$punish}, nuevo karma: {$user->karma}\n");
        }
        $db->barrier();
    }
}

function do_load() {
	global $db, $current_user;
	$annotation = new Annotation('ec2-autoscaler');
	if (!$annotation->read()) {
		return _('no hay estadísticas disponibles');
	}
	$group = unserialize($annotation->text);
	$str = "web instances: $group->instances, ";
	$str .= "cpu average load: ".round($group->load, 2) . "%, ";
	$str .= "cpu max average ($group->measures periods): ".round($group->load_max, 2)."%, ";
	$str .= "stored at: ". get_date_time($annotation->time);
	return $str;
}

function do_load()
{
    global $db, $current_user;
    $annotation = new Annotation('ec2_watch');
    if (!$annotation->read()) {
        return _('no hay estadísticas disponibles');
    }
    $group = json_decode($annotation->text);
    $str = "web instances: {$group->instances}, ";
    $str .= "cpu average load: " . round($group->avg_load, 2) . "%, ";
    $str .= "last action: {$group->action} ";
    $str .= "last change: " . get_date_time($group->changed_ts) . " ";
    $str .= "stored at: " . get_date_time($annotation->time);
    return $str;
}

 /**
  * This functions builds an array (key\value) with entity data, to later insert on the db
  *
  * @param Entity $entity
  *
  * @return array
  */
 private function getKeyValuePropertiesByEntity(Entity $entity)
 {
     $properties = array_keys($entity->getProperties());
     $keyValueProperties = array();
     foreach ($properties as $property) {
         $method = $this->getterMethodToGetPropertyValue($property);
         $propertyValue = $entity->{$method}();
         if (is_null($propertyValue)) {
             continue;
         }
         $annotations = $this->annotation->getAnnotationsByProperty($property, $entity);
         $propertyKey = $this->getValueOfAnnotation($annotations, self::PROPERTY_ANNOTATION);
         $keyValueProperties[$propertyKey] = $propertyValue;
     }
     return $keyValueProperties;
 }

 /**
  * Discovers all the annotations of a given class file
  *
  * @param string             $class a class file
  * @return array
  */
 public static function discover($class)
 {
     try {
         if (!file_exists($class)) {
             throw new Exception($class . " does not exist");
         }
         $text = file($class, FILE_IGNORE_NEW_LINES | FILE_SKIP_EMPTY_LINES);
         $annotations = array();
         $currentAnnotations = array();
         foreach ($text as $key => $line) {
             if (strpos($line, "* @annotation") !== false) {
                 $currentAnnotations[] = trim(str_replace("* @annotation", "", $line));
             } else {
                 $functionName = "";
                 if (count($currentAnnotations) > 0 && Annotation::discoverFunctionName($line, $functionName)) {
                     $annotations[$functionName] = $currentAnnotations;
                     $currentAnnotations = array();
                 }
                 unset($text[$key]);
             }
         }
         return $annotations;
     } catch (Exception $e) {
         Functions::dump($e->getMessage());
         return NULL;
     }
 }

 public static function calculate_type($reflection)
 {
     $annotations = Annotation::parse($reflection);
     if (isset($annotations['type'])) {
         return $annotations['type'];
     } else {
         $defaults = $reflection->getDeclaringClass()->getDefaultProperties();
         $default_value = $defaults[$reflection->getName()];
         if (is_null($default_value)) {
             return 'null';
         }
         if (is_string($default_value)) {
             return 'string';
         } else {
             if (is_integer($default_value)) {
                 return 'integer';
             } else {
                 if (is_float($default_value)) {
                     return 'float';
                 } else {
                     if (is_bool($default_value)) {
                         return 'boolean';
                     } else {
                         if (is_array($default_value)) {
                             return 'array';
                         }
                     }
                 }
             }
         }
     }
 }

 /**
  * Ler um model e gera um SQL referente
  * @param	Model	$model	instância do model para gerar o SQL
  * @return	string			retorna o SQL do model
  */
 protected function getTable(Model $model)
 {
     $annotation = Annotation::get(get_class($model));
     $class = $annotation->getClass();
     if ($class->Entity) {
         $table = new stdClass();
         $table->Name = $class->Entity->Name ? $class->Entity->Name : get_class($model);
         $table->Columns = array();
         $table->Keys = array();
         foreach ($model as $field => $value) {
             $property = $annotation->getProperty($field);
             if ($this->isField($property)) {
                 $column = new stdClass();
                 $column->Name = $this->getField($field, $property);
                 if (!$column->Name) {
                     $column->Name = $field;
                 }
                 $column->Type = $this->getType($property);
                 $column->Nullable = $this->getNullable($property);
                 $table->Columns[] = $column;
                 if ($this->isKey($property)) {
                     $table->Keys[] = $this->getKey($field, $property);
                 }
             }
         }
         return $this->getSql($table);
     }
 }

 static function insert($type, $ref_id, $user_id = 0, $annotation = false)
 {
     global $db, $globals;
     $ip = $globals['user_ip'];
     $ip_int = $globals['user_ip_int'];
     $sub = SitesMgr::my_id();
     // Get this subsite's parent id (or itself if it's a parent)
     $res = $db->query("insert into logs (log_sub, log_date, log_type, log_ref_id, log_user_id, log_ip_int, log_ip) values ({$sub}, now(), '{$type}', {$ref_id}, {$user_id}, {$ip_int}, '{$ip}')");
     if ($res && $annotation) {
         $a = new Annotation('log-' . $db->insert_id);
         $a->text = $annotation;
         $a->store(time() + 86400 * 30);
         // Valid for one month
     }
     return $res;
 }

 public function save()
 {
     $annotation = new Annotation($this);
     $table = $annotation->getClassAnnotation('table');
     $reflector = new ReflectionClass($this);
     $properties = $reflector->getProperties();
     $data = array();
     foreach ($properties as $property) {
         $isPersistent = $annotation->getPropertyAnnotation($property->getName(), 'persistent');
         $field_name = $annotation->getPropertyAnnotation($property->getName(), 'field');
         var_dump($field_name);
         if (true === $isPersistent) {
             $data[$field_name] = $property->getValue();
         }
     }
     var_dump($data);
 }

 /**
  * Initialize the annotation.
  */
 public function initAnnotation($properties)
 {
     $this->_map($properties, array('format'));
     parent::initAnnotation($properties);
     if (!isset($this->format)) {
         throw new AnnotationException('FormatAnnotation requires a format property');
     }
 }

 /**
  * Resolve if callable is closure or function
  *
  * @param $callable
  * @return Invokable
  */
 public static function ofFunction($callable)
 {
     if ($callable instanceof \Closure or is_string($callable) and function_exists($callable)) {
         $annotations = Annotation::ofFunction($callable);
         $reflector = new \ReflectionFunction($callable);
         return new Invokable($callable, Invokable::CLOSURE, $annotations, $reflector);
     }
 }

 /**
  * Execute the console command.
  *
  * @return mixed
  */
 public function fire()
 {
     $doc_id = $this->argument('doc_id');
     $filename = $this->argument('filename');
     $doc = Doc::where('id', $doc_id)->first();
     $this->info("Exporting activity for " . $doc->title);
     $annotations = Annotation::where('doc_id', $this->argument('doc_id'))->with('user')->with('comments')->get();
     $comments = Comment::where('doc_id', $this->argument('doc_id'))->with('user')->get();
     $headers = array("Created At", "Link", "Display Name", "Full Name", "Email", "Type", "Quote", "Text");
     $toExport = array();
     foreach ($annotations as $annotation) {
         $annotationArray = array();
         $annotationArray['date'] = $annotation->created_at;
         $annotationArray['link'] = URL::to('/') . $annotation->uri . '#annotation_' . $annotation->id;
         $annotationArray['display_name'] = $annotation->user->fname . " " . substr($annotation->user->lname, 0, 1);
         $annotationArray['full_name'] = $annotation->user->fname . " " . $annotation->user->lname;
         $annotationArray['email'] = $annotation->user->email;
         $annotationArray['type'] = 'Annotation';
         $annotationArray['quote'] = $annotation->quote;
         $annotationArray['text'] = $annotation->text;
         array_push($toExport, $annotationArray);
         foreach ($annotation->comments as $comment) {
             $user = User::find($comment->user_id);
             $commentArray = array();
             $commentArray['date'] = $comment->created_at;
             $commentArray['link'] = "";
             $commentArray['display_name'] = $user->fname . " " . substr($user->lname, 0, 1);
             $commentArray['full_name'] = $user->fname . " " . $user->lname;
             $commentArray['email'] = $user->email;
             $commentArray['type'] = "Annotation Comment";
             $commentArray['quote'] = "";
             $commentArray['text'] = $comment->text;
             array_push($toExport, $commentArray);
         }
     }
     foreach ($comments as $comment) {
         $commentArray = array();
         $commentArray['date'] = $comment->created_at;
         $commentArray['link'] = "";
         $commentArray['display_name'] = $comment->user->fname . " " . substr($comment->user->lname, 0, 1);
         $commentArray['full_name'] = $comment->user->fname . " " . $comment->user->lname;
         $commentArray['email'] = $comment->user->email;
         $commentArray['type'] = $comment->parent_id === null ? "Comment" : "Sub-comment";
         $commentArray['quote'] = "";
         $commentArray['text'] = $comment->text;
         array_push($toExport, $commentArray);
     }
     $this->info('Saving export to ' . $filename);
     $fp = fopen($filename, 'w');
     fputcsv($fp, $headers);
     foreach ($toExport as $row) {
         fputcsv($fp, $row);
     }
     fclose($fp);
     $this->info('Done.');
 }