import org.pathvisio.core.view.MIMShapes; //导入依赖的package包/类
private static Resource getLineTypeResource(LineType lt) {
	if(lt.equals(LineType.ARROW)) {
		return null;
	} else if (lt.equals(LineType.TBAR)) {
		return Wp.Inhibition;
	} else if (lt.equals(MIMShapes.MIM_CATALYSIS)) {
		return Wp.Catalysis;
	} else if (lt.equals(MIMShapes.MIM_CONVERSION)) {
		return Wp.Conversion;
	} else if (lt.equals(MIMShapes.MIM_INHIBITION)) {
		return Wp.Inhibition;
	} else if (lt.equals(MIMShapes.MIM_STIMULATION)) {
		return Wp.Stimulation;
	} else if (lt.equals(MIMShapes.MIM_TRANSLATION)) {
		return Wp.TranscriptionTranslation;
	} else if (lt.equals(MIMShapes.MIM_NECESSARY_STIMULATION)) {
		System.out.println("TODO: necessary stimulation");
	} else if (lt.equals(MIMShapes.MIM_MODIFICATION)) {
		System.out.println("TODO: modification");
	}
	return null;
}
 

import org.pathvisio.core.view.MIMShapes; //导入依赖的package包/类
/**
 * Create an instance of this class.
 * @param portAddress The url that points to the WikiPathways webservice.
 * @throws ServiceException
 */
public WikiPathwaysClient(URL portAddress) {
	MIMShapes.registerShapes();
	
	HttpClient httpclient = HttpClients.createDefault();
	port = new WikiPathwaysRESTBindingStub(httpclient, portAddress.toString());
}
 

import org.pathvisio.core.view.MIMShapes; //导入依赖的package包/类
/**
 * Create an instance of this class.
 * @param portAddress The url that points to the WikiPathways webservice.
 * @throws ServiceException
 */
public WikiPathwaysClient(URL portAddress) throws ServiceException {
	if(portAddress != null) {
		port = new WikiPathwaysLocator().getWikiPathwaysSOAPPort_Http(portAddress);
	} else {
		port = new WikiPathwaysLocator().getWikiPathwaysSOAPPort_Http();
	}
	MIMShapes.registerShapes();
}
 

import org.pathvisio.core.view.MIMShapes; //导入依赖的package包/类
public static void main(String[] args) {
	PreferenceManager.init();

	if(args.length < 2) {
		printHelp();
		System.exit(-1);
	}

	try {
		String inStr = args[0];
		String outStr = args[1];

		//Enable MiM support (for export to graphics formats)
		MIMShapes.registerShapes();

		Logger.log.setStream (System.err);
		Logger.log.setLogLevel (false, false, true, true, true, true);

		File inputFile = new File(inStr);
		File outputFile = new File(outStr);
		Pathway pathway = new Pathway();
		pathway.readFromXml(inputFile, true);

		//Parse commandline arguments
		Map<PathwayElement, List<Color>> colors = new HashMap<PathwayElement, List<Color>>();

		for(int i = 2; i < args.length - 1; i++) {
			if("-c".equals(args[i])) {
				PathwayElement pwe = pathway.getElementById(args[++i]);
				String colorStr = args[++i];
				if(pwe != null) {
					List<Color> pweColors = colors.get(pwe);
					if(pweColors == null) colors.put(pwe, pweColors = new ArrayList<Color>());
					int cv = Integer.parseInt(colorStr, 16);
					pweColors.add(new Color(cv));
				}
			}
		}

		BatikImageExporter exporter = null;
		if(outStr.endsWith(ImageExporter.TYPE_PNG)) {
			exporter = new BatikImageExporter(ImageExporter.TYPE_PNG);
		} else if(outStr.endsWith(ImageExporter.TYPE_PDF)) {
			exporter = new BatikImageExporter(ImageExporter.TYPE_PDF);
		} else if(outStr.endsWith(ImageExporter.TYPE_TIFF)) {
			exporter = new BatikImageExporter(ImageExporter.TYPE_TIFF);
		} else {
			exporter = new BatikImageExporter(ImageExporter.TYPE_SVG);
		}
		ColorExporter colorExp = new ColorExporter(pathway, colors);
		colorExp.export(exporter, outputFile);
		colorExp.dispose();

	} catch(Exception e) {
		e.printStackTrace();
		System.exit(-2);
		printHelp();
	}
}
 

import org.pathvisio.core.view.MIMShapes; //导入依赖的package包/类
public void setUp()
{
	PreferenceManager.init();
	MIMShapes.registerShapes(); //TODO: should not be necessary to call this first
}